doc via github actions

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/pkgdown.yaml

@@ -0,0 +1,50 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+permissions: read-all
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -20,3 +20,4 @@ vignettes/*.tex
 tests/testthat/Rplots.pdf
 revdep
 pkgdown
+docs

DESCRIPTION

@@ -1,12 +1,18 @@
+Type: Package
 Package: corrgram
 Title: Plot a Correlogram
 Version: 1.14
-Authors@R: person("Kevin","Wright", email="[email protected]", comment=c(ORCID = "0000-0002-0617-8673"), role=c("aut","cre","cph"))
 Date: 2021-04-29
-Type: Package
+Authors@R: 
+    person("Kevin", "Wright", , "[email protected]", role = c("aut", "cre", "cph"),
+           comment = c(ORCID = "0000-0002-0617-8673"))
 Description: Calculates correlation of variables and displays the results
-    graphically. Included panel functions can display points, shading, ellipses, and
-    correlation values with confidence intervals. See Friendly (2002) <doi:10.1198/000313002533>.
+    graphically. Included panel functions can display points, shading,
+    ellipses, and correlation values with confidence intervals. See
+    Friendly (2002) <doi:10.1198/000313002533>.
+License: MIT + file LICENSE
+URL: https://kwstat.github.io/corrgram/, http://kwstat.github.io/corrgram/
+BugReports: https://github.com/kwstat/corrgram/issues/
 Imports:
     graphics,
     grDevices,
@@ -20,11 +26,8 @@ Suggests:
     seriation,
     sfsmisc,
     testthat
-License: MIT + file LICENSE
-LazyData: true
->>>>>>> Stashed changes
+VignetteBuilder: 
+    knitr
 Encoding: UTF-8
-URL: https://kwstat.github.io/corrgram/
-BugReports: https://github.com/kwstat/corrgram/issues/
-VignetteBuilder: knitr
-RoxygenNote: 7.2.3
+LazyData: true
+RoxygenNote: 7.3.2

NEWS.md

@@ -1,14 +1,16 @@
-# corrgram 1.15 - unpublished
+# corrgram 1.15 unpublished
 
 * Switch to MIT license
 
-# corrgram 1.14 - Apr 2021
+
+# corrgram 1.14 (2021-04-01)
 
 * The `seriation` package is moved from Imports to Suggests.  This makes `corrgram` lighter loading for most people. (Requested by P.Kiener and others)
 
 * The `outer.labels` argument has improved default values.
 
-# corrgram 1.13 - Jul 2018
+
+# corrgram 1.13 (2018-07-09)
 
 * Test coverage at 95% using `covr` package.
 
@@ -18,69 +20,80 @@
 
 * `panel.conf` now only allows `cor.method="pearson"` (which is the default.) Fix issue #13.
 
-# corrgram 1.12 - May 2017
+
+# corrgram 1.12 (2017-05-07)
 
 * New vignette about an invalid correlation matrix.
 
 * `corrgram()` gives a better warning if a symmetric matrix has values outside [-1,1].
 
 * Added package logo on github.
 
-# corrgram 1.11 - Apr 2017
+
+# corrgram 1.11 (2017-04-03)
 
 * New argument `outer.labels` for adding labels along outside edges of corrgram. (Request of Vanessa Bruat and others.)
 
-# corrgram 1.10 - Nov 2016
+
+# corrgram 1.10 (2016-11-09)
 
 * Function `corrgram()` now returns the correlation matrix.
 
 * Fixed custom label ordering when `order=TRUE` for M.Bruneaux.
 
 * Began using `testthat` package.
 
-# corrgram 1.9 - Jul 2016
+
+# corrgram 1.9 (2016-07-16)
 
 * New panel function `panel.cor` for colored correlation values.
 
 * Fixed minor bugs with no complete cases.
 
 * Added more cases to tests directory.
 
-# corrgram 1.8 - Jul 2015
+
+# corrgram 1.8 (2015-07-03)
 
 * Namespace changes due to R devel changes.
 
-# corrgram 1.7 - Feb 2015
+
+# corrgram 1.7 (2015-02-13)
 
 * Added more seriate options.
 
-# corrgram 1.6 - Aug 2014
+
+# corrgram 1.6 (2014-08-29)
 
 * Moved packages from Depends to Imports.
 
 * Argument `label.pos` now defaults to c(.5, .5) for x,y positioning. (Request of Evan Williams).
 
 * New argument `cor.method`. (Request of Evan Williams).
 
-# corrgram 1.5 - Aug 2013
+
+# corrgram 1.5 (2013-08-29)
 
 * Updated references links.  (Request of Michael Friendly).
 
 * Fixed small bug with test for correlation matrix. (Reported by F. Rosa)
 
-# corrgram 1.4 - Nov 2012
+
+# corrgram 1.4 (2012-11-07)
 
 * New argument `col.regions` to specify panel colors.
 
 * Re-worked examples section for more variety.
 
-# corrgram 1.3 - Aug 2012
+
+# corrgram 1.3 (2012-08-15)
 
 * New panel function `panel.bar`.  (Request of dadrivr)
 
 * Added example for unclipped labels (in the test suite).
 
-# corrgram 1.2 - Mar 2012
+
+# corrgram 1.2 (2012-03-28)
 
 * Small bug.  Now accepts NA values in correlation matrices, and NAs caused by missing combinations of data and cor(use="pair").
 
@@ -90,11 +103,13 @@
 
 * Test suite now includes corrgram of inverse correlation, partial correlation matrices.
 
-# corrgram 1.1 - Oct 2011
+
+# corrgram 1.1 (2011-10-20)
 
 * Added namespace.
 
-# corrgram 1.0 - Jul 2011
+
+# corrgram 1.0 (2011-07-02)
 
 * New panel function `panel.conf`.
 
@@ -108,10 +123,12 @@
 
 * Ordering can now be done on absolute value of correlations.
 
-# corrgram 0.1 - Dec 2006
+
+# corrgram 0.1 (2006-12-01)
 
 * First release to CRAN.
 
-# corrgram 0.0  - Apr 2006
+
+# corrgram 0.0  (2006-04-01)
 
 * Package development begins.

_pkgdown.yml

@@ -0,0 +1,4 @@
+url: http://kwstat.github.io/corrgram/
+template:
+  bootstrap: 5
+