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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 135 44

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 123 59

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 86 28

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 50 14

  5. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 28 12

  6. minerva_analysis minerva_analysis Public

    JavaScript 26 6

Repositories

Showing 10 of 160 repositories
  • ad-personalized Public
    labsyspharm/ad-personalized’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 10, 2025
  • ad-rna-editing Public
    labsyspharm/ad-rna-editing’s past year of commit activity
    R 0 1 0 0 Updated Mar 7, 2025
  • minerva-author Public

    Tool to create images and configuration files for Minerva-Story

    labsyspharm/minerva-author’s past year of commit activity
    Python 15 MIT 15 19 1 Updated Mar 5, 2025
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    labsyspharm/minerva-author-ui’s past year of commit activity
    JavaScript 4 MIT 5 2 4 Updated Mar 5, 2025
  • mcmicro Public

    Multiple-choice microscopy pipeline

    labsyspharm/mcmicro’s past year of commit activity
    Nextflow 123 MIT 59 57 2 Updated Mar 4, 2025
  • basic-illumination Public

    ImageJ BaSiC shading correction for use with Ashlar

    labsyspharm/basic-illumination’s past year of commit activity
    Python 8 MIT 10 2 0 Updated Mar 4, 2025
  • mcreport Public

    Pathology report tool for mcmicro

    labsyspharm/mcreport’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 2, 2025
  • cycif.org Public

    cycif.org GitHub Pages Website

    labsyspharm/cycif.org’s past year of commit activity
    JavaScript 2 MIT 9 5 4 Updated Feb 26, 2025
  • peripheral-neuropathy Public
    labsyspharm/peripheral-neuropathy’s past year of commit activity
    0 0 0 0 Updated Feb 25, 2025
  • r-indra-gsea Public
    labsyspharm/r-indra-gsea’s past year of commit activity
    R 0 0 0 0 Updated Feb 25, 2025
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