spoa-upgrade: bugfix

lbcb-sci · Dec 29, 2023 · 2884beb · 2884beb
1 parent 1317be4
commit 2884beb
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/src/main.cpp b/src/main.cpp
@@ -152,7 +152,7 @@ int main(int argc, char** argv) {
     auto polisher = racon::createPolisher(input_paths[0], input_paths[1],
         input_paths[2], type == 0 ? racon::PolisherType::kC :
         racon::PolisherType::kF, window_length, quality_threshold,
-        error_threshold, trim, min_coverage, match, mismatch, gap, num_threads,
+        error_threshold, trim, match, mismatch, gap, num_threads, min_coverage,
         cudapoa_batches, cuda_banded_alignment, cudaaligner_batches,
         cudaaligner_band_width);
 

diff --git a/src/polisher.cpp b/src/polisher.cpp
@@ -57,10 +57,10 @@ void shrinkToFit(std::vector<std::unique_ptr<T>>& src, uint64_t begin) {
 std::unique_ptr<Polisher> createPolisher(const std::string& sequences_path,
     const std::string& overlaps_path, const std::string& target_path,
     PolisherType type, uint32_t window_length, double quality_threshold,
-    double error_threshold, bool trim, int8_t match, int8_t mismatch, int8_t gap,
-    uint32_t num_threads, int32_t min_coverage, uint32_t cudapoa_batches,
-    bool cuda_banded_alignment, uint32_t cudaaligner_batches,
-    uint32_t cudaaligner_band_width) {
+    double error_threshold, bool trim, int8_t match, int8_t mismatch,
+    int8_t gap, uint32_t num_threads, int32_t min_coverage,
+    uint32_t cudapoa_batches, bool cuda_banded_alignment,
+    uint32_t cudaaligner_batches, uint32_t cudaaligner_band_width) {
 
     if (type != PolisherType::kC && type != PolisherType::kF) {
         fprintf(stderr, "[racon::createPolisher] error: invalid polisher type!\n");