Optionally output cytoscape json files #61

	on:
	pull_request:
	branches: [main]

	jobs:
	main:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [ ubuntu-latest ]
	python-version: [ 3.8, 3.9, "3.10", 3.11 ]
	steps:
	- uses: actions/checkout@v3
	with:
	persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
	fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
	ref: ${{ github.event.pull_request.head.ref }}

	- name: Run pre-commit hooks
	uses: pre-commit/[email protected]

	- name: Run pre-commit CI
	uses: pre-commit-ci/[email protected]
	if: always()

	- name: Install and configure Poetry
	uses: snok/install-poetry@v1

	- name: Install
	run: make install-ci

	- name: Test
	run: make test

	- name: Coverage
	if: matrix.python-version == '3.11'
	run: make coverage

	- name: Coverage Badge
	if: matrix.python-version == '3.11'
	uses: tj-actions/coverage-badge-py@v2

	- name: Verify Changed files
	if: matrix.python-version == '3.11'
	uses: tj-actions/verify-changed-files@v16
	id: verify-changed-files
	with:
	files: coverage.svg

	- name: Coverage Commit files
	if: steps.verify-changed-files.outputs.files_changed == 'true'
	run: \|
	git config --local user.email "github-actions[bot]@users.noreply.github.com"
	git config --local user.name "github-actions[bot]"
	git add coverage.svg
	git commit -m "Updated coverage.svg"

	- name: Coverage Push changes
	if: steps.verify-changed-files.outputs.files_changed == 'true'
	uses: ad-m/github-push-action@master
	with:
	github_token: ${{ secrets.github_token }}
	branch: ${{ github.head_ref }}

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