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Misc cleanup #52

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merged 13 commits into from
Feb 1, 2024
+260 −435
Merged

Misc cleanup #52

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8511d1c
deleted outdated workflow files
olivroy Jan 31, 2024
4b89cd1
usethis::use_github_action('check-standard') + devtools::build_readme()
olivroy Jan 31, 2024
de5f19b
Use latest gh actions with usethis::use_github_action()
olivroy Jan 31, 2024
b2cf035
Remove devtools dependency
olivroy Jan 31, 2024
2accee1
Redocument with roxygen2 7.3.1
olivroy Jan 31, 2024
853a1fb
Remove roxygen2 and covr from Suggests (not used in examples / tests …
olivroy Jan 31, 2024
625f6b5
Add a pkgload dependency for the consistency-tests vignette.
olivroy Jan 31, 2024
782c8f6
Add dplyr and tibble :: in vignettes
olivroy Jan 31, 2024
e3ba83d
silence r cmd check
olivroy Jan 31, 2024
854c9e3
Add r cmd check workflow for the devel branch
olivroy Jan 31, 2024
a425b52
test lints
olivroy Jan 31, 2024
42e26aa
use magrittr pipe
olivroy Jan 31, 2024
bf81b5e
tweaks
olivroy Jan 31, 2024
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Remove devtools dependency
@olivroy
olivroy committed Jan 31, 2024
commit b2cf0359fb506ed708ff175aabd84f53b1c7d92d
1 change: 1 addition & 0 deletions .Rbuildignore
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Original file line number Diff line number Diff line change
@@ -15,3 +15,4 @@
^cran-comments\.md$
^CRAN-SUBMISSION$
^\.lintr$
.Rprofile$
1 change: 0 additions & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -116,7 +116,6 @@ Collate:
'write-doc-audit.R'
Suggests:
covr,
devtools,
knitr,
rmarkdown,
roxygen2,
5 changes: 0 additions & 5 deletions vignettes/consistency-tests.Rmd
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Original file line number Diff line number Diff line change
@@ -15,11 +15,6 @@ knitr::opts_chunk$set(
)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

```{r setup}
library(scrutiny)
```
6 changes: 0 additions & 6 deletions vignettes/debit.Rmd
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Original file line number Diff line number Diff line change
@@ -9,7 +9,6 @@ vignette: >
%\VignetteIndexEntry{DEBIT}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
%\VignetteDepends{devtools}
bibliography: references.bib
---

@@ -20,11 +19,6 @@ knitr::opts_chunk$set(
)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

```{r setup, message=FALSE}
library(scrutiny)
```
4 changes: 0 additions & 4 deletions vignettes/duplicates.Rmd
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Original file line number Diff line number Diff line change
@@ -14,10 +14,6 @@ knitr::opts_chunk$set(
)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

```{r setup}
library(scrutiny)
5 changes: 0 additions & 5 deletions vignettes/grim.Rmd
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Original file line number Diff line number Diff line change
@@ -9,7 +9,6 @@ vignette: >
%\VignetteIndexEntry{GRIM}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
%\VignetteDepends{devtools}
bibliography: references.bib
---

@@ -20,10 +19,6 @@ knitr::opts_chunk$set(
)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

```{r setup, message=FALSE}
library(scrutiny)
4 changes: 0 additions & 4 deletions vignettes/grimmer.Rmd
View file
Original file line number Diff line number Diff line change
@@ -19,10 +19,6 @@ knitr::opts_chunk$set(
library(scrutiny)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

Granularity-related inconsistency of means mapped to error repeats, or GRIMMER, is a test for the mathematical consistency of reported means or proportions with the corresponding standard deviations (SDs) and sample sizes [@anaya2016b; @allard2018].

5 changes: 0 additions & 5 deletions vignettes/infrastructure.Rmd
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Original file line number Diff line number Diff line change
@@ -5,7 +5,6 @@ vignette: >
%\VignetteIndexEntry{General infrastructure}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
%\VignetteDepends{devtools}
bibliography: references.bib
---

@@ -16,10 +15,6 @@ knitr::opts_chunk$set(
)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

```{r setup, message=FALSE}
library(scrutiny)
5 changes: 0 additions & 5 deletions vignettes/rounding.Rmd
View file
Original file line number Diff line number Diff line change
@@ -14,11 +14,6 @@ knitr::opts_chunk$set(
)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

```{r setup, message=FALSE}
library(scrutiny)
```
6 changes: 0 additions & 6 deletions vignettes/wrangling.Rmd
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Original file line number Diff line number Diff line change
@@ -5,7 +5,6 @@ vignette: >
%\VignetteIndexEntry{Data wrangling}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
%\VignetteDepends{devtools}
---

```{r, include = FALSE}
@@ -15,11 +14,6 @@ knitr::opts_chunk$set(
)
```

```{r include=FALSE}
# Dev only: load scrutiny from within scrutiny
devtools::load_all(".")
```

```{r setup, message=FALSE}
library(scrutiny)
```