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CE-HKGFinder

Computational Identification of Housekeeping Gene Candidates in C. elegans

Bo Li, Jingxin Tao, Youjin Hao, et al.

PS: The big datasets used in this study will be available on my google drive, and detailed informations are as follows. Please click the link https://drive.google.com/drive/folders/1zesh6xKr_Hobc6pseqUjC42JtpeGGERq?usp=sharing to check them.

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CE-HKGFinder

Computational Identification of Housekeeping Gene Candidates in C. elegans

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Name		Name	Last commit message	Last commit date
Latest commit History 50 Commits
Data		Data
Image		Image
SM		SM
.gitattributes		.gitattributes
Chunk01-Obtain GEO accession number of Series, with Species.R		Chunk01-Obtain GEO accession number of Series, with Species.R
Chunk02-Download the datasets, GPL200.R		Chunk02-Download the datasets, GPL200.R
Chunk03-Obtain the statistics informations about GPL200.R		Chunk03-Obtain the statistics informations about GPL200.R
Chunk04-Preprocessing and integrating the individual datasets.R		Chunk04-Preprocessing and integrating the individual datasets.R
Chunk05-Prepare the final datasets for the next analysis.R		Chunk05-Prepare the final datasets for the next analysis.R
Chunk06-Construct the biggest gene expression matrix for all datasets.R		Chunk06-Construct the biggest gene expression matrix for all datasets.R
Chunk07-Identification of house-keeping genes, primarily.R		Chunk07-Identification of house-keeping genes, primarily.R
Chunk08-Convertion the probe IDs to gene symbols.R		Chunk08-Convertion the probe IDs to gene symbols.R
Chunk09-Investigate the top100 of six SGLs.R		Chunk09-Investigate the top100 of six SGLs.R
Chunk10-Validation of housekeeping genes.R		Chunk10-Validation of housekeeping genes.R
Chunk11-Validation of housekeeping using the DNA microarray and RNA-seq datasets.R		Chunk11-Validation of housekeeping using the DNA microarray and RNA-seq datasets.R
Chunk12-SD Boxplot for validation of housekeeping using the DNA microarray and RNA-seq datasets.R		Chunk12-SD Boxplot for validation of housekeeping using the DNA microarray and RNA-seq datasets.R
Chunk13-Identification of house-keeping genes (parallel version).R		Chunk13-Identification of house-keeping genes (parallel version).R
Chunk14-Other codes in this study.R		Chunk14-Other codes in this study.R
README.md		README.md

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CE-HKGFinder

Computational Identification of Housekeeping Gene Candidates in C. elegans

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