Merge to master: AgroPortal release 2.8.0 #41
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…e-wrong-page-after-search fix: bug after search : the redirect for an empty search page and hidden popup
* remove dead code * return the first concept if there is no roots * return AlertMessageComponent if skos and empty roots * revert removing missing class error in get_class helper --------- Co-authored-by: Syphax Bouazzouni <[email protected]>
… and Bug fixes (#335) * Merge pull request #281 from ontoportal-lirmm/fix-bug-in-slices-links fix bug in slices links * Merge pull request #212 from ontoportal-lirmm/fix/signup-fields-validation Fix: Signup page input fields validation * Merge pull request #214 from ontoportal-lirmm/feature/update-account-page-design Feature: Update submited ontologies and created projet sections design * Merge pull request #237 from ontoportal-lirmm/feature/ecoportal/groups-categories-administration Feature: Add categories and groups administration * Merge pull request #273 from ontoportal-lirmm/fix/bug-ANAEETHES-ontology Fix: Ontology description text display when it is a complex object not a string * Merge pull request #277 from ontoportal-lirmm/Fix-alphabetical-sorting Fix: Alphabetical sorting in the the collection members display * Fix: bug of display list submitted ontologies of account setting (#286) * fix display list of views of ontologies in Submitted ontologies #270 * fix bug of display text in alert when there is no collections (#285) fix the alert message text that is wrapping and overflowing out #266 * Merge pull request #287 from ontoportal-lirmm/fix-bug-reset-password Fix: bug of reset password * Fix bug of select list view of ontology (#289) * Add Chosen.js functionality to fix bug of select views of ontolgy * Add Chosen.js functionality for list views ontologies * fix bug of update ontology where there is no view * Refactor code * Delete ponse = @ontology.update * Merge pull request #295 from ontoportal-lirmm/Fix-display-the-list-of-concepts-in-a-collection-at-one-sight Fix: display the list of concepts in a collection at one sight * Merge pull request #291 from ontoportal-lirmm/Fix-remove-views-of-submitted-ontologies-in-account-setting Fix: Remove views ontologies in list of submitted ontologies * Merge pull request #280 from ontoportal-lirmm/Fix-Ontology-style-text-display-when-it-is-uri Fix: ontology style text display when it is uri * Merge pull request #254 from ontoportal-lirmm/feature/add-ontology-count-to-group-and-category Feature: add column ontologies count to categories and-groups admin page * Merge pull request #302 from ontoportal-lirmm/feature/migrate-fair-score-js-code Feature: Migrate fair score JS code to Stimulus controllers * fix generated bug after edit group and category (#334) --------- Co-authored-by: SirineMhedhbi <[email protected]>
* remove dead code * return the first concept if there is no roots * return AlertMessageComponent if skos and empty roots * Fix message text
…cept not in a scheme information (#355) * Fix bug of roots * fix JQuery simple tree script removing css class of elements on click * add concept tree links muted title text if skos and not in a scheme * make the concept_scheme request parameter nil if ressource is not skos * optimimze the build tree function by passing to the childs the acronym instead of requesting ontology.aconym for each child --------- Co-authored-by: Syphax Bouazzouni <[email protected]>
…lues (#356)" This reverts commit a9932ba.
* add test and appliance environment to deploy action * add PRIVATE_CONFIG_REPO environment for the deploy action * revert removing the jumphost step in deploy action * set default deploy branch for each of the environments * set the deployment rails_env to "appliance" for all the environments * use a variable for the config folder path to use in the get_config task * extract deploy ssh_options into the deploy.rb file * add test environment capistrano deploy file * make the jumpbox host and username configurable for the deployment * make PRIVATE_CONFIG_REPO default example use https with github PAT token * remove the on push in development branch auto deploy
* Update browse page design with the new design on figma * Fix the problems in the design of the browse page and make it responsive * Add the light color variable for differnet themes * Extract the ontologies section in the browse page to be the src of the turbo frame * Change the color of the turbo progress bar * Update the design of the switch component * Add the checked property to the chips component * Add the filtering logic of the browse page * Add the checked filters count in the browse page * Remove the angular from the browse page * In browse page, limit the ontology description to 3 lines and add a button show more to see the entire description * remove duplicate action changed->turbo-frame#updateFrame in the browser * add text truncate stimulus controller * replace in the browser descriptions js with a controller to show more * add timeago stimulus controller to show dates in a human readable way * add ontology contacts and format to the ontology card * remove old angular files * yarn update to install the new JS dependencies * add ontology browser page and empty state image * refactor useHistory mixin This reverts commit 719e456. * add count slot to the chips components * add small version of the loader component * add filters count by ontology * add the count slots to the chips in the browse page * use turbo streams to update ontologies result and the filters counts * add ontology browse private icon * add admin-color theme variable * add private only switch to the ontologies browser * implement the private only ontologies filter * add title tooltip for the browser filters chips * update turbo_frame component to use a custom loader * handle the case where submission publication attribute is not an array * update infinite scroll component to add custom loader and be generic * create and use tree infinite scroll component * create ontology browser card component * decrease the debounce time of the browser search input * remove no more used get_metrics_hash function * move submission filters methods to a concern module * add back to top button and counter loader to the browse page * implement and use submissions filter concern * create browser ontologies partial * update chips component to add label attribute * update tooltip controller to not show if title is empty * update browse page filters section titles * use the new chips component 'label' attribute for the browser filters * fix the wrong browser count when show private only * migrate the fair score js code to stimulus to make it work with turbo * put again the accidentally removed ontology_params method * prevent zombie submission with no ontology) bug in the browse page * fix browse page layout issues * fix unable to see full content of the filter collapsible block in the browse page * move deprecated and view cards of ontology down instead next to name * remove default margin left of the pill button component * add tooltip message to the ontology that is the view of another ontology * change the layout of the browse page to have the upload button and search in same level * add admin style classes * add interactive option for use tooltip controller * add disabled state to chips component * show the filter count loader each time changed * add released year card to the ontology cards * add the debug card to the ontologies card if user is admin --------- Co-authored-by: Bilelkihal <[email protected]>
… previews in the lookbook (#336) * Merge pull request #234 from ontoportal-lirmm/feature/update-footer-design Feature: Update footer design * Merge pull request #249 from ontoportal-lirmm/feature/update-account-page-submited-onto Feature: Update account page submitted ontologies * Merge pull request #236 from ontoportal-lirmm/feature/lookbook Feature: Add Lookbook to preview components * Merge pull request #242 from ontoportal-lirmm/feature/lookbook Feature: Add Lookbook to preview view components - fix the new version release * Merge pull request #262 from ontoportal-lirmm/feature/add-rounded-button-component-to-lookbook Feature: Add rounded button to lookbook * Merge pull request #248 from ontoportal-lirmm/feature/add-notification-message-component Feature: Add notification message component * Merge pull request #268 from ontoportal-lirmm/feature/add-submission-fields-components Feature: Add submission fields components * Merge pull request #288 from ontoportal-lirmm/feature/add-upload-ontology-components-to-lookbook Feature: Add form inputs components to lookbook * Merge pull request #284 from ontoportal-lirmm/feature/update-nested-from-input-component-design Feature: Update nested form input component design * Merge pull request #282 from ontoportal-lirmm/feature/extract-search-input-component Feature: Extract search input component * Merge pull request #296 from ontoportal-lirmm/feature/re-organize-lookbook Feature: Re organize lookbook previews * Merge pull request #305 from ontoportal-lirmm/feature/add-table-component Feature: Add table component & Migrate the views to use it * Merge pull request #312 from ontoportal-lirmm/feature/extract-search-input-component Feature: Extract search input component - follow up * Merge pull request #313 from ontoportal-lirmm/fix/nested-from-component-empty-state Fix: Nested form component empty state * Merge pull request #301 from ontoportal-lirmm/feature/add-switch-input-preview Feature: Add switch input preview * Merge pull request #304 from ontoportal-lirmm/feature/add-link-text-components Feature: Add link text components * Merge pull request #310 from ontoportal-lirmm/feature/update-select-component Feature: update select component * Merge pull request #300 from ontoportal-lirmm/feature/add-modal-link-component Feature: Add modal component preview and helpers * Merge pull request #303 from ontoportal-lirmm/feature/add-pill-button Feature: Add pill button * Merge pull request #297 from ontoportal-lirmm/feature/add-tabs-component Feature: Add tabs component * Merge pull request #306 from ontoportal-lirmm/feature/add-circle-progress-bar-component Feature: Add circle progress bar component (style, JS, code and preview) * Merge pull request #247 from ontoportal-lirmm/feature/update-agroportal-primary-color Feature: Update AgroPortal primary color * Merge pull request #319 from ontoportal-lirmm/feature/extract-form-input-components Feature: Extract form input components * Merge pull request #324 from ontoportal-lirmm/feature/add-summary-page-components Feature: Extract summary page components * Merge pull request #314 from ontoportal-lirmm/add-buttons-components-to-lookbook Feature: Add buttons components to lookbook * Feature: Add progress pages component (#328) * add progress pages component * put again the type argument for button component * fix progress pages item not center if test is long * make progress pages container take full width by default * Fix progress item position (first & last one) to be aligned with the content * fix progress item checked state to show the icon and the good background * make the progress page component preview width bigger --------- Co-authored-by: Bilel Kihal <[email protected]> * Merge pull request #259 from ontoportal-lirmm/feature/add-other-states-to-card-message-component Feature: Add warning state to card message component * Merge pull request #238 from ontoportal-lirmm/feature/update-nav-bar-design Feature: Update nav bar design * Merge pull request #331 from ontoportal-lirmm/feature/update-404-error-design Feature: Update 404 error design * Merge pull request #263 from ontoportal-lirmm/feature/update-nav-bar-design Fix: replace nav_bar css nav-link to top-nav-nav-link to prevent conflicts --------- Co-authored-by: Bilel Kihal <[email protected]>
… New metadata mode and docker images (#240) * use link text component to implement external link component * use link text component to implement internal link component * use internal and external links component in the label link component * add previews to link text components * use the table component in the ontology mappings tab * add table component (style, preview and code) * make dropdown content. with no default padding * update concept details component to use the Table and dropdown component * add concept details component preview * update collection, concept, label_xl and scheme views with the new concept details component * migrate notes table to use Table component * add pills version for the tabs component * migrate concept show to use the pill version of the tab component * add circle progress bar component (style, JS, code and preview) * add option to the tabs container to have pinned right action buttons * add the concept show tabs go to json and purl buttons pinned to in right * add to the ontology viewer tabs a language selector pinned to the right * change internal link icon in link text component * fix button component in lookbook * add secondary button to lookbook * update search input component to have form-control style by default * change agent search input to use it's Id instead of name to find it * add Jquery data table to the admin agents table * change agent search input to use it's Id instead of name to find it * update nested form component to have an empty state to send to the back * fix metadata curator not save agent update (bug still in changed_values) * add display agent in the metadata curator * handle the display of no array agents in summary page * add generate_agent_input helper to the submission helpers * fix submission save/update error state * update display agent to show agent affiliations * make select input by default not open to add values * fix text field component not using the required argument * remove the hardcoded hasCreator and publisher inputs in submission from * add concept sub_menu helpers * use sub_menu helpers in the concept browser * update collection member count redirection sub_menu to use list * install tom select * update select component with tom select * update search input component to handle custom link turbo targets * update search input component to have form-control style by default * remove no used home search controller replaced with search input * fix. ontology search input component ajax_url argument to add ?acronym= * fix home page search input style * migrate search input style from home.scss to search_input.scss * handle for agent show the case they are string * handle contact nested form empty state * add margin top and bottom for the nested form component * update nested form component to have an empty state to send to the back * handle contact nested form empty state * fix select component id * use not centred layout for the select input previews * remove the select id in the select input component template * remove is_selected_value variable in the select input component * make concept list frame not load if concept_collections param is empty * add 'data-turbo-frame':'_top' to member count link to show top loader * remove container class from the new and edit submission views * handle string errors (location file not given ) in the submission form * merge primary and secondary button in one component * remove undesired secondary button css file * add icon property to regular button component * add link type for regular button component * install and configure omniauth gems * add a helper to get omniauth_providers details * add external auth providers icons in the login in page * add oauth login action * add omniauth_token_provider helper * add outline state to the tabs component * migrate concept show to use tabs outline * migrate concept browser to use tabs outline * Add the checked property to the chips component * show by default one row in the nested from input component * Add email, password, url components to lookbook * refactor select input component template to use the rails helper * use stimulus values in select input component controller * migrate date, email, password, url and text component to inline call * fix text area component not showing the value given as argument * move date, file,text_area,text,password,url, email to one preview file * move input field component to input namespace * remove internal-link icon default height * add count slot to the chips components * add ontology viewer style file , for tabs responsiveness * fix a min width for the concept browser * update chips component to add label attribute * fix ontology viewer header not centred * handle date time field exception when value is nil * fix tabs container component type check * update chip button style * override bootstrap text-primary color * update chips button component to have optional html attributes * replace open-popup icon with popup-link icon * update ontology viewer header style and template * add ontology count_subscriptions helper * add show licence details popup action * add attribute_enforced_values helper to enforced values of an attribute * use date time field component to display the uploaded date in the header * use rounded button components in the header page for the json and edit * use chip button component for license button to popup in the header * Add icon button variation to regular button component * update the design of page not found * add info tooltip component * add header text component * disable by default <p> bottom margin every where * add card component * add image component * add list layout component * add borderless and layout fixed states for the table component * add to summary section action links and info tooltip slots * update dropdown to add empty state and use header & list components * add for field container component an html content label slot * update text area field to use span instead of p, to have less padding * add to table row component an optional css class argument * update chip button style to have the same line height in all the states * make link to modal helper use PopupLinkText component * add components helper file, regrouping helper to use component easily * Add size parameter to button component * Add color parameter to button component * Add state parameter to the button component * add slim state to the regular button component * add slim, danger, warning, disabled, noAnimarion variations to button component * groupe all buttons in one folder in the lookbook * put ontology subscribe button component preview in buttons namespace * fix function names duplication in the buttons previews and link preview * extract button loader component from regular button component * refactor regular button components to have less arguments and code duplication * set button component type by default equal 'submit' * fix buttons component default padding * fix omniauth_provider_info helper not working for github * put again the type argument for button component * fix slim state of the button loader component * make the call the to displayAnimation event triggered only if enabled * hide button icon when it's not initialized to avoid undesired padding * Feature: Add progress pages component (#328) * add progress pages component * put again the type argument for button component * fix progress pages item not center if test is long * make progress pages container take full width by default * Fix progress item position (first & last one) to be aligned with the content * fix progress item checked state to show the icon and the good background * make the progress page component preview width bigger --------- Co-authored-by: Bilel Kihal <[email protected]> * Feature: add alert component (#330) * add alert component types icons * create alert component and add to it it's logic * add alert component structure and style * Add alert component close icon * add close logic to alert component * add lookbook preview for alert component * make alert component get closed auto after a delai * add auto close option for the alert component with a configurable delay * add the option to alert component to use also the content as message * replace old alert message component usage with the new one --------- Co-authored-by: Syphax bouazzouni <[email protected]> * do the appropriate changes to the usage of the button component according to the updates we did * fix animation id problem (animation starts in the wrong button) in button component * add something went wrong page * Feature: Implement the new upload ontology form (#292) * use inline svg in file input loader component * add hint to text input component * add error state to input field component * add helper text to input field component * add notes to input field component to explain how to use it * combine text area input component with input field component * groupe inputs in one folder in the lookbook * fix style issues in input field component * refactor input field component code to remove repetition * remove the duplicated alert component preview * make the input field component generic using a the content slot * implement form date component * implement form text area component * implement form text input component * duplicate the select component to be in the "form" namespace * fix select input component inversed open_to_add_values argument usage * move and rename file input loader component to be in the form module * update select component to use InputFieldComponent to have a label * remove unsed text in NestedFormInputComponentPreview * Fix bug of select list view of ontology (#289) * Add Chosen.js functionality to fix bug of select views of ontolgy * Add Chosen.js functionality for list views ontologies * fix bug of update ontology where there is no view * Refactor code * Delete ponse = @ontology.update * fix nested form component inputs focus color to use primary variable * add upload ontology from style file * extract from upload ontology from the location partial * update upload ontology form design * make the upload ontology form button style apply also submit button * add id argument to chips components to permit having multiple chips with same name * fix label not showing for the from select component * put the correct input names in the new ontology form * replace the finish div in the new ontology form with a submit tag * use for the administrated_by input with the form select component * implement the backend create action for the new upload ontology form * fix text area component not showing the value given as argument * add the default values for the inputs in the new ontology form * extract submission_from_params method from the save_submission concern * handle new ontology upload errors in the create action * add default empty submission in the new action * add type parametre to text_input_component so we can specify type as email, number .. * make nested form component start by default by one form initialized * add URI field to the upload ontology process * add search input component * add ontology search input component re-using search-input component * re-use ontology search input component in the topnav * re-use the ontology-search-input in the home * update search-input component to make it more generic * rename view components "form" namespace to "input" * create the display namespace for the data display components * create the layout namespace for view component that structure content * use the table component in the ontology mappings tab * add table component (style, preview and code) * make dropdown content. with no default padding * update concept details component to use the Table and dropdown component * add concept details component preview * update collection, concept, label_xl and scheme views with the new concept details component * migrate notes table to use Table component * install tom select * update select component with tom select * use not centred layout for the select input previews * remove the select id in the select input component template * remove is_selected_value variable in the select input component * fix select component id * add pill button component * add loader component small option and previews * update ontology subscribe component design and add preview * move rounded button preview to the button namespace * extract modal helpers into a helper file * use the new modal helpers instead of writing the view component or frame * add option to modal to show in connect alone * add modal component style * add modal component preview * move the modal component preview into the layout namespace * Update the design of the switch component * add switch input component preview * update search input component to handle custom link turbo targets * update search input component to have form-control style by default * remove no used home search controller replaced with search input * fix. ontology search input component ajax_url argument to add ?acronym= * fix home page search input style * migrate search input style from home.scss to search_input.scss * add margin top and bottom for the nested form component * update nested form component to have an empty state to send to the back * handle contact nested form empty state * migrate the fair score js code to stimulus to make it work with turbo * remove the old fair_score.js code * fix home page responsiveness issues * fix footer responsiveness * fix nav bar responsiveness and add admin to nav items * fix home annotator/recommender section title * fix home responsiveness for small screens * add link text component * use link text component to implement popup link component * use link text component to implement external link component * use link text component to implement internal link component * use internal and external links component in the label link component * add previews to link text components * change internal link icon in link text component tmp tmp tmp tmp tmp tmp tmp tmp tmp tmp * refactor select input component template to use the rails helper * use stimulus values in select input component controller * Add email, password, url components to lookbook * use url component in upload ontology process * fix location subform selection via text on upload ontology * change date of creation by modification date field, and add comment of changes field when upload new version of an ontology * fix select input component to use the name * use the correct name for the visibility and allowed to view inputs * make ontology edit and new form use multi part * fix URI input name and value to replace ontology by submission * add disable state to input field component * make acronym field disabled when uploading a new version of an ontology * migrate the ontology picker single partial to select component * Add the checked property to the chips component * update date component with flatpicker * add disabled state to input field component * update submission helpers with the new components * refactor update ontology code to remove undesired ifs * add text field and text area components to lookbook * add select component to lookbook * add date field to the lookbook * add "inline_svg" gem to use svg in files * make the components preview container include JS cod if needed * add language field component * add link field component * add date_time field component * add license field component * add text area field component * add summary section component preview * add dropdown component * add field container component to show a label with it's value vertically * add nested form input component preview * add a pop-up with list of ontologies in group and category admin table * Revert "add a pop-up with list of ontologies in group and category admin table" This reverts commit c4b391a9d3e5272703051922bcb9495ac35297c8. * add a select to update ontologies in the pop-up edit of group in admin table * add a select to update ontologies in the pop-up edit of category in admin table * Refactor code * refactor code and fix bug * remove old undesired text area input from lookbook * add Upload file input component to lookbook * combine all input components in one globale component * remove style params from input field component * recover text area field component (after deleting it by mistake in a previous commit * add hint to text input component * add error state to input field component * add helper text to input field component * add notes to input field component to explain how to use it * combine text area input component with input field component * groupe inputs in one folder in the lookbook * make the input field component generic using a the content slot * implement form date component * implement form text area component * implement form text input component * duplicate the select component to be in the "form" namespace * move and rename file input loader component to be in the form module * update select component to use InputFieldComponent to have a label * remove unsed text in NestedFormInputComponentPreview * fix nested form component inputs focus color to use primary variable * add upload ontology from style file * extract from upload ontology from the location partial * update upload ontology form design * make the upload ontology form button style apply also submit button * add id argument to chips components to permit having multiple chips with same name * fix label not showing for the from select component * put the correct input names in the new ontology form * replace the finish div in the new ontology form with a submit tag * use for the administrated_by input with the form select component * implement the backend create action for the new upload ontology form * fix text area component not showing the value given as argument * add the default values for the inputs in the new ontology form * extract submission_from_params method from the save_submission concern * handle new ontology upload errors in the create action * add default empty submission in the new action * add type parametre to text_input_component so we can specify type as email, number .. * make nested form component start by default by one form initialized * add URI field to the upload ontology process * rename view components "form" namespace to "input" * create the display namespace for the data display components * create the layout namespace for view component that structure content * add modal component preview * move the modal component preview into the layout namespace * change internal link icon in link text component tmp tmp tmp tmp tmp tmp tmp tmp tmp tmp * add text field and text area components to lookbook * add date field to the lookbook * fix label not showing for the from select component * fix text area component not showing the value given as argument * add type parametre to text_input_component so we can specify type as email, number .. * refactor select input component template to use the rails helper * use stimulus values in select input component controller * Add email, password, url components to lookbook * use url component in upload ontology process * fix location subform selection via text on upload ontology * fix select input component to use the name * use the correct name for the visibility and allowed to view inputs * make ontology edit and new form use multi part * fix URI input name and value to replace ontology by submission * migrate the ontology picker single partial to select component * Add the checked property to the chips component * Merge remote-tracking branch 'origin/feature/update-upload-ontology' into feature/update-upload-ontology * change date of creation by modification date field, and add comment of changes field when upload new version of an ontology * add disable state to input field component * update submission helpers with the new components * refactor update ontology code to remove undesired ifs * add id parameter to input field component * replace finish button in upload ontology by the button component * Add size parameter to button component * Add color parameter to button component * Add state parameter to the button component * make finish button animated in upload ontology process * add progress pages component * put again the type argument for button component * fix progress pages item not center if test is long * migrate upload ontology form to use progress pages component * make progress pages container take full width by default * update login page button component usage to have an ID * put again the removed JS code for visibility and is a view * fix chips style padding removed from merging with the browse branch * update date input in the ontology form to use the metadata helper * fix chips style in upload ontology form * remove old new submission form from the bottom of the new ontology page * Fix select multiple items, delete icon style in select component * fix upload ontology style to have less margin bottom * extract ontology updater and saver concern form ontologies controller code * update submission create action tu update also the ontology * use AlertComponent to display ontology form error messages * create input helpers to use inputs component more easily and use them in ontology form * remove no more used style code in upload ontology style file * fix ontology form date and contact inputs not showing error message * set update ontology to true in the create action of submission controller * fix alignement of chips and button components --------- Co-authored-by: Syphax Bouazzouni <[email protected]> Co-authored-by: SirineMhedhbi <[email protected]> Co-authored-by: Sirine Mhedhbi <[email protected]> * Feature: Update summary page design (#244) * re-style persons and organizations section * add safety parameter to metrics variables * re-style identifiers bloc * relocate the projects sections with visits * modify the table of verisons' name to submissions * add the condition to the fair score bloc for logged in and non logged in users * remove contact title * remove creation text from the general information bloc * remove unecessary containers * remove the title " versions" * remove the unecessary code * remove the links bloc to replace it with the identifiers * relocate the methodology bloc * remove projects bloc and relocate it * remove duplicated code * remove static code from the competency question variable * add the date array * add the date array to show the dates section * update Gemfile.lock file * add keywords and keyclasses containers * remove unecessary margins * add the style to modal component * add the function " show dates " to ontologies controllers * remove the duplicated fair score title * remove released column from the submissions table * add prettier file * fix components index style typo issue * add pull url section in summary if user is an the ontology admin * implement projects section in the summary page * fix an issue in the alert message component not showing the content * add circle progress bar component * override bootstrap text-primary color * add submission metadata component * update summary additional metadata content to show all the attributes * add stimulus read more to package.json * show corresponding lang in the tree view * remove audience from aditionnal metadata * add download links array to the download_link function * update the summary page css * re-style the submissions table in the summary page * update the contact and release date information * chnage categories and domains to categories and subjects * remove the old contact information * change the identifier bloc to an open one * add dates bloc to summary page * add the json entry to the links bloc * add projects variables * add methodology bloc * remove visits bloc to relocate it * relocate the visits bloc * add views bloc to the summary page * Show data in platform language when lang is equal to 'all' * fix sort_by in collections and schemes * make the summary two columns bigger * hide the fair score section if not enabled or ontology is AGROVOC * make sub.publication iterable * use tooltip to show language in concept tree links * re-style the fair-score bloc with the new design * re-style fair-score bloc * Auto stash before merge of "feature/update-summary-page-design" and "origin/feature/update-summary-page-design" * re-locate the logo in the summary page * chnage additionnal metadata modal title to all metadata * align the general information and the logo * add function show-category-name to domains section * add summary page dropdown component * add summary section component * extract summary page section to partials * use display_in_multiple_languges methode to show properties in multiple langs * add tooltips to show language in tree view * change 'process_concept' method name to 'language_hash' * define 'display_in_multiple_languages' method * use 'langauge_hash' methode in collection instead of 'process_concept' * cls_id to string * use 'langauge_hash' methode in schemes instead of 'process_concept' * update tooltip controller to support position * use 'langauge_hash' methode in _list_view instead of 'process_concept' * use 'display_in_multiple_languges' to display properties * fix missing 'end' in application helper * display_in_multiple_languges in schemes * fix language_hash method name typo * check if prefLabel is nil * use tooltip to show preLabel lang in schemes * use tooltip to show preLabel lang in collections * use tooltip in collection * fix a typo display_in_multiple_languages function name * extract link_to_scheme helper for schemes tree view * extract helpers to display the collections list view * refactor language related helpers code in application_helper * add language argument to scheme and collection tree links * refactor scheme and collection helpers to make it work for mutli-langs * move submission_metadata into the application helper * extract summary page section to partials * make the summary page responsive * disable summary ontology relation network mouse zoom in/out * move fairness, submission & metrics sections of summary page to bottom * make the submissions table borderless * move see all metadata button to the summary description section bottom * update the usage of the DropdownContainer Component in summary page * fix summary ontology relation network height * use the correct submission description value instead of a placeholder * make the keyClasses of type link clickable * hide Categories and subjects of the summary page if nil or empty * migrate additional_metadata helper to SubmissionMetadataComponent * update Gemfile.lock * remove container fluid for the appliance layout * fix top_nav responsiveness width * fix design on summary page css * update fair score bloc * remove third row section in summary page * Update Fair Score score section * Add persons and organizations variables * fix summary page inline SVG icons * add natural language to the summary page description * hide ontology hasDomain if empty in the summary page * update summary page to make it work for the new keyclasses attribute * Add link component to identifiers section on the summary page * Add css to the identiders section' attributes * updates vis's * update chips button component to have optional html attributes * fix language field to show the lexvo URL if not matched * make label ajax link component use the ChipsButton component * show the go to API in the top let of the ontology viewer * remove the duplicate get_link_for_cls_ajax helper * update keywords section in the summary to use get_link_for_cls_ajax * add show_licences method * add licenses modal file * add licenses modal * put value as nil by default * add condition to license modal * add show license method to ontoloies controller * add or operation to value and content * make field container use content if given value is nil * fix summary fair score not showing because the controller was removed * fix submission edit page container layout * fix topnav raising an issue when session does not contain ontologies * unify the usage of submission_metadata everywhere * use concept_link helper in the concept show view * use ChipButton component for person & organization in summary page * fix field_container margin if using content not the given value * migrate projects and usage information summary section to use components * Remove maring in the class ontology-details-tabs * fix ontology header responsiveness issues * fix ontology-details-header-layout * fix ontology details tabs layout * fix summary page layout * fix summary page responsiveness issues * add metrics evolution popup in the summary page * fix summary page creators input margin bottom in summary page * fix submissions table dropdown button white space * Revert "Merge branch 'feature/update-browse-page-design' into stage" This reverts commit 5bffb8c6cc7f4ccdeb23babd5df7a0a7ae016252. * Revert "Merge remote-tracking branch 'refs/remotes/origin/feature/support-multilingual-part-2'" * Remove line 56/57 from .gitignore file * Delete .prettierrc * Delete depiction.svg * Delete github.svg * Delete test_visits.svg * Delete openUp.svg * add depiction section partial * add depiction section partial * Add identifier partial section * Add visits partial * Add all projects partial * add projects partial * Add views partial * Add height line on the chip button * Add condition to versionIRI prop * update chip button * Add properties tables to the ontology controller * Use partials and properties on the summary page * fix bug on the fair score section * add conditions to identifiers * add metrics evolution popup in the summary page * Merge branch 'development' into feature/update-summary-page-design * fix summary page creators input margin bottom in summary page * fix submissions table dropdown button white space * Revert "Merge branch 'feature/update-browse-page-design' into stage" This reverts commit 5bffb8c6cc7f4ccdeb23babd5df7a0a7ae016252. * Revert "Merge remote-tracking branch 'refs/remotes/origin/feature/support-multilingual-part-2'" * remove the summary logo placeholder image * fix the drodown button color * fix summary page css * add the tooltip to the dropwon container * add condition to the tooltip usage * fix the field container component * include ApplicationHelper to the summary section component * add the info_tooltip to the card tiltle * add the info_tooltip function to the application helper * add the tooltip to the submission helper * add the tooltip to components on the summary page * add tooltip info to project section * add condition to the icons on the general information section * add tooltip infot to identifiers section * create props array to the projects section * refactor the project section * fix the visits section download arrow * add tootlip to summary page * add ontology viewer style file , for tabs responsiveness * fix a min width for the concept browser * replace open-popup icon with popup-link icon * remove no more used partials in the summary page * migrate submission table to use Table component * clean summary style file and use new icons for ontology relation graph * remove no more used show_depiction and info_tooltip code * fix concept details raw section title padding * use action link slot for summary fairness and submissions sections * update fair score partial design * use component and helpers in summary page partials * migrate submission metadata component to use table component and display_attributes helper * simplify summary ontology_relations_data code * reverse metrics evolution data to have its chart in the right direction * migrate ontology relation network filter to use select input component * remove no more used icons in summary page * simplify ontologies controller summary action by using submission_metadata helper * put again methods used by the index action * handle ontologies with no submission summary page * put temporary help message in summary page section --------- Co-authored-by: Syphax Bouazzouni <[email protected]> Co-authored-by: Bilel Kihal <[email protected]> * Feature: Update edit ontology design (#320) * remove the unnecessaire variable is_selected_value from the select component haml file * update submission form content to use attributes category not display * make submission edit frame have a custom id from params * extract submission form attributes category array * fix submission from tabs style by removing the old edit-ontology-tab cls * fix edit ontology tabs style * fix edit submission error * install tippy js for the hover notes * Add see the wiki sentence in edit ontology page * replace edit ontology buttons with component button * make reset all fields button works in edit ontology page * Make input field label font size bigger (12px --> 14px) * add data attribute for select and text components * handle for the input field component the case attributes are nil * remove no more used form group component and text field component * add a label argument for nest agent input component * make summary licenses popup use attr_label instead of attribute_infos * fix tom select hidden input style to not take full width * extract useTomSelect component tom select controller * update search input component to use InputFieldComponent * update input field help text slot to support raw html display * update submission location form JS to use 'var' instead of 'const' to make it work even if the partial is re-render again in the same context (turbo frame reload) * remove old submission contact and location form partials * update ontology picker single to use select input helper * use attr_label instead of generate_attribute_label helper in the metadata curator table header * redirect ontology edit action to submission controller new or edit * replace metadata selector component with a helper method * update ontology form partial to have only ontology attributes in it * update ontology new template to add submission attributes in it directly * fix regular button display animation by adding as argument a loader id * update inputs helpers to add the arguments data, id and help * extract from ontology and submission form the metadata_help_link helper * update submission new action to redirect to the ontology new template * add submission edit_properties action for a list of submission attributes * add ontology details tab to the submission form * add metadata and submission inputs helpers files * simplify the submission form content and remove no more used helpers * show in the submission edit action the new submission form template * simplify the submission format form and use the new input helpers * make the select component inline rendered * update tooltip to use Tippy.js * add tooltip popovers for submission attribute inputs * move submission form partial to the edit template * transform EditSubmissionAttributeButtonComponent to a helper function * add the button "add new submission" to the ontology viewer header * remove no more used ontology controller update action * fix nested turbo frame to be hidden when a parent frame is busy/loading * create error_message_alert helper to display an alert with erroneous fields * add required asteriks to submission attribute that enforce existence * make the submission location form partial work for existing submission * fix submission format form partial syle * transform submission form_content the view that display update errors * fix ontology form hasDomain and group inputs that can't be reset empty * make selected_attribute? helper work for equivalent or direct attribute * move back some code logic from ontology updated concern to controllers * create render_submission_inputs helper to display inputs components * use the default template of submissions controller edit action * disable submission form categories tabs when the properties filter used * handle submission pullLocation parameter update depending of isRemote * update submission update controller to add ontology update step * fix ontology metadata curator to use the new submission form * remove submission new template, replaced with ontologies new * make attr_header_label use a custom label as argument * add title to new and edit submission buttons in the ontology viewer * put again the removed margin top of summary section only in summary page * move submission_metadata to metadata_helper and application_controller files * have custom labels for summary submission table header * hide tooltip from attribute labels in the summary section * remove the add et edit submission button in front the submissions table * remove useless ontology value in submission updater * redirect edit page to home if user not connected * remove default today value from date input --------- Co-authored-by: Bilel Kihal <[email protected]> * make the not found page message customizable depending of the error type * put again the old internal server error message with style fixing * Feature: Update browse page design (#217) * Update browse page design with the new design on figma * Fix the problems in the design of the browse page and make it responsive * Add the light color variable for differnet themes * Extract the ontologies section in the browse page to be the src of the turbo frame * Change the color of the turbo progress bar * Update the design of the switch component * Add the checked property to the chips component * Add the filtering logic of the browse page * Add the checked filters count in the browse page * Remove the angular from the browse page * In browse page, limit the ontology description to 3 lines and add a button show more to see the entire description * remove duplicate action changed->turbo-frame#updateFrame in the browser * add text truncate stimulus controller * replace in the browser descriptions js with a controller to show more * add timeago stimulus controller to show dates in a human readable way * add ontology contacts and format to the ontology card * remove old angular files * yarn update to install the new JS dependencies * add ontology browser page and empty state image * refactor useHistory mixin This reverts commit 719e45604eb6a303c5ca0fae9b34753a34f19ade. * add count slot to the chips components * add small version of the loader component * add filters count by ontology * add the count slots to the chips in the browse page * use turbo streams to update ontologies result and the filters counts * add ontology browse private icon * add admin-color theme variable * add private only switch to the ontologies browser * implement the private only ontologies filter * add title tooltip for the browser filters chips * update turbo_frame component to use a custom loader * handle the case where submission publication attribute is not an array * update infinite scroll component to add custom loader and be generic * create and use tree infinite scroll component * create ontology browser card component * decrease the debounce time of the browser search input * remove no more used get_metrics_hash function * move submission filters methods to a concern module * add back to top button and counter loader to the browse page * implement and use submissions filter concern * create browser ontologies partial * update chips component to add label attribute * update tooltip controller to not show if title is empty * update browse page filters section titles * use the new chips component 'label' attribute for the browser filters * fix the wrong browser count when show private only * migrate the fair score js code to stimulus to make it work with turbo * put again the accidentally removed ontology_params method * prevent zombie submission with no ontology) bug in the browse page * fix browse page layout issues * fix unable to see full content of the filter collapsible block in the browse page * move deprecated and view cards of ontology down instead next to name * remove default margin left of the pill button component * add tooltip message to the ontology that is the view of another ontology * change the layout of the browse page to have the upload button and search in same level * add admin style classes * add interactive option for use tooltip controller * add disabled state to chips component * show the filter count loader each time changed * add released year card to the ontology cards * add the debug card to the ontologies card if user is admin --------- Co-authored-by: Bilelkihal <[email protected]> * Feature: Show multiple languages (#252) * refactor ontology_viewer_page_name to support multiple languages * refactor sort_by in collection and schemes to support multiple languges * update ontology_viewer title * add all option in language selection * show prefLabel with the specific language in case of all languages * remove a forgotten debugger in the JS code of language change selector * revert concept details prefLabel multiple language display * show corresponding lang in the tree view * Show data in platform language when lang is equal to 'all' * fix sort_by in collections and schemes * make sub.publication iterable * use tooltip to show language in concept tree links * use display_in_multiple_languges methode to show properties in multiple langs * add tooltips to show language in tree view * change 'process_concept' method name to 'language_hash' * define 'display_in_multiple_languages' method * use 'langauge_hash' methode in collection instead of 'process_concept' * cls_id to string * use 'langauge_hash' methode in schemes instead of 'process_concept' * update tooltip controller to support position * use 'langauge_hash' methode in _list_view instead of 'process_concept' * use 'display_in_multiple_languges' to display properties * fix missing 'end' in application helper * display_in_multiple_languges in schemes * fix language_hash method name typo * check if prefLabel is nil * use tooltip to show preLabel lang in schemes * use tooltip to show preLabel lang in collections * use tooltip in collection * fix a typo display_in_multiple_languages function name * extract link_to_scheme helper for schemes tree view * extract helpers to display the collections list view * refactor language related helpers code in application_helper * add language argument to scheme and collection tree links * refactor scheme and collection helpers to make it work for mutli-langs * fix sort in tree_link_to_concept and add return first in array on language_hash methode * extract multi language helpers into a file * make display_in_multiple_languages directly do the language_hash inside * rename the helper get_concept_label to select_language_label * move the not found prefLabel alert in the prefLabel row * catch concept list error when concept label is nil * add main_language_label helper to show the concept label main language label * fix loader showed in small state by default * fix alert component text overflowing * reset turbo progress bar to blue * add id to tabs container component * extract sorted_labels helpers for schemes and collections * fix mappings new form not finding the ontology by id bu by acronym * use main_language_label helper for build_tree * use main_language_label helper in ontology_viewer_page_name * restore removed properties section content --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Feature: Add search language selector (#309) * add search language selector * add language in the ajax request * add flags to search select * Merge branch 'development' into feat/multilingual * customizing TomSelect controller * use tomselect * remove bootstrap select * SelectComponent * remove flag-icon and use his cdn instead * use flag-icon cdn * remove flag icon import statement * change id for select lang * remove << HEAD * update tom select component to use options inner HTML text to show icons * add lag-icons-rails and iso-639 gems to handle flags display and update code usage * add language selector component * remove tooltipster dependecies * fix flag size in the summary page * add selected argument to LanguageSelector component --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * fix generated bug after edit group and category (#334) * Feature : create a new component to display status of submissions (#345) * Create Submissions status component to display icons * Add alert and archive icons * fix the width and height of icons * add icon parameter to info tooltip component * add spacer style css to display icon with text * Use the component in the submission table * Use icons in front of the name of each ontology on the browse page. * Add logic to render icons for each status of submissions * adapt the icons * Display icons of status only if the admin is logged * refactor ligne to test if session user is admin * Change the conditions to display icons * Add the removed code * Fix : bug feedback window (#349) * Fix bug of chips id * Remove duplicated render of the feedback action * Fix bug of feedback page not showing as Popup * remove unused images (#366) * Feature: add IT and DE internationalization for the homepage (#367) * add 'i18n-tasks' and 'deepl-rb' gems to fix and translate missing locales * add italian and german locales * fix internalization of the home, annotator, login, recommender and user form * Fix: the new homepage bugs (#370) * translate home page * fix search input (navbar and home position ) * fix nav items padding to not be stick the search input when admin * Merge branch 'feat/multilingual-ui' into stage * remove no more used help and about routes * ensure the omniauth_provider_info is get when put a string argument (#372) * Fix: the new summary page bugs (#371) * update language field component to have a better display of not valid ISO links * fix the error page image not displaying the good color * fix turbo frame error text extraction from the new errors pages * fix summary links section display to use link component * catch remaining cases when @concept is nil in the ontology viewer * fix ontology subscribe button error message not showing * show a better error message when no classes found * fix the concept dates list view to use the correct alert component * add '.svg' to the LinkText components icons * fix new ontology form error not displaying when acronym is already used * fix concept details, inSchemes and In Collection chips with no margin * not show narrower row in concept details * Fix: the new ontology form bugs (#368) * add the max date option to date inputs * show the validity date input in the ontology form if status is retired * fix in ontology form not revealed sections after not valid save * add show SKOS form information reveal in the ontologies new form * add reveal component to hide/show a content depending of a condition * use reveal component to display or hide conditional inputs in the ontology form * hide turbo frame error message when context changed (#369) * Fix: the new submission edit form bugs (#373) * add placeholder argument to select component * add option to the nested form component to have an empty row at start * fix select input id vs name mixing, making the submission_metadata_selector to not work as expected * fix select input component where we can add inputs not valid by default * fix new ontology form error state can't change acronym * fix edit ontology metadata form error state not rendering * reset agents input values to fetch there values if edit metadata on error state * fix ontology viewOf detaching from parent * re-use attr_metadata helper where possible to not call multiple time to submission_metadata endpoint taking to much time * fix submission metadata wrong categories got from the API * not show errors message inside nested inputs * extract ontology form inputs into helpers to be re-used in submission form * fix edit ontology metadata form error state not rendering * hide ontology format input advanced options * remove the display of an empty row by default for list_field_inputs * fix usage of reset_agent_attributes concern * Fix: disable pagination for the new browse page (#361) * disable pagination for the browse page * fix ontology browse sort by not selected from request params * make work show retired when unselected after been selected * disable turbo links for the ontology browser card to redirect to good page * update browse card layout to not hide the chips under the metrics cards * add again retired filter in the browse page * add the total count showing in the browse page * enable again the sort by fair score and popularity * use SquareBadge and Chips components in the ontology card * remove default sort_by by creationDate if we use the search * make the sort_by select width bigger in the browse page * Fix: the new summary page bugs - part 2 (#374) * update language field component to have a better display of not valid ISO links * fix the error page image not displaying the good color * fix turbo frame error text extraction from the new errors pages * fix summary links section display to use link component * catch remaining cases when @concept is nil in the ontology viewer * fix ontology subscribe button error message not showing * show a better error message when no classes found * fix the concept dates list view to use the correct alert component * add '.svg' to the LinkText components icons * fix new ontology form error not displaying when acronym is already used * fix concept details, inSchemes and In Collection chips with no margin * not show narrower row in concept details * fix label xl display in multilingual in concept details and label_xl show * move ontology relation network complexity to the controller * add an exception catch in the metrics evolution when an ontology metrics is nil * hide action column of concept notes and mappings table * fix the new project link after login to redirect in the correct page * fix language select to work with iso-1 or iso-3 or plain language name * fix the summary page max width to 145px * fix edit submission metadata link to target top * make clicking in the ontology browse fair score details link redirect to summary page fairness block * use bootsnap to boot the app environment faster * reset agents input values to fetch there values if edit metadata on error state * fix agent search input style * handle case agent affiliations is nil in summary page * in new ontology form auto select the first status possible * fix ontology form visiblity in private not showing additional information * disable turbo in the ontology browser card link * Fix: update ontology summary and edit pages code to adapt the change in the backend metadata (#375) * add "cancel" button to the submission edit form * fix homepage analytics to use all the analytics not only the last_month * handle the change of metadata categories re-naming * Fix: Modify the display of certain texts on home page(#357) * Modify the display of certain texts on home page * Change css of buttons * add upload white icon * add function to render formatted number * change content text in search * Add tooltip info to Fair score and change the dispaly of figures * Delete added icon and fix bug in see details * fix home page main button hover style * use localized values in the home page --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: changes in browse page texts (#363) * Add admin default alert * add style to alert component * Change display text and format button * change display : see more and see less * Add box-shadow to certain elements * Change text in search box * make the box-shadow of the browse page lighter * make the upload button in the browse page take all the width * use the same browser page upload button component in the home page * Change the display of alert component * change the capitalized letter * revert the addition of an argument in the alert component * make the alert message in the browse page take only 70% of the width --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Fix: Update my account page texts (#353) * Update my account page * Fix display text github * use $REST_URL instead portal_name in the api documentation link in the account page --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Fix: changes summary page texts (#364) * Update the display of texts and values * add custom labels to the properties_hash_values helper * change the display and the style of texts * Change the order and the text in section dates * add tooltip info to fair score * add infotooltip to submissions section * update info text in submissions * fix language display to be aligned in the center * pass directly the attr_metadata arguement SubmissionMetadataInput object in the attr_label helper * Change the display of text in general information * make the custom labels for metadata attributes work again --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Fix: changes in upload submission texts(#360) * Change content text * Add target to component * fix new submission form help text, to be only in two lines --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Fix: changes in edit submission page texts (#378) * Add style to SwitchInputComponent * Change the display of some texts * change the display of titles in dates section * change the text of input label * add again the default_empty_row: true option to contact_input helper * remove the submission edit page dates hard coded label , will fixed in the backend * fix switch component to use a custom header with a custom style * fix generation of boolean metadata attribute with enforce values --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Feature: Add UI tests infrastructure and Github action (#377) * add test CI * add ontologies controller tests * Fix: global issue with the 2023 Q2 release (#380) * make the recomender and annotator text bigger and have a place holder * update fair score label from N/A score to Not yet supported * remove organization name from the widgets tab title * extract the metadata help link to the settings file * remove notes tabs title * remove the subscribe button to the notes tab * add space to instance details title before the two points * fix the display of concepts if skos and classes if owl * add UM logo for support logos in home page * fix support images width in the home page * Feature: Add social icons to the footer (#379) * add api icon footer * add email icon footer * add sparql icon footer * add new footer icons --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Fix: Changes in home page and new submission page (#381) * Add icons to fair score (json and api) * change format to Representation language * change twitter news by news * add ontoportal logo * fix bug of switching tabs on the summary page * Add style to ontoportal logo * Add min, max, average to fair score * Change the color of icons in login page * Change the style of "raw data" * change the style of raw data to primary color * Change the site name displayed in the browser * Delete to black line in upload mappings button * change the color of score buttons * Give all logos the same width and height * Add fairness_link to use json icon * Change the width of twitter and fair score box * change organisation to site in the locale files * adjust the json icon * Feature: Remove handlebars dependency and update ontology properties tab to use plain HTML (#346) * remove handlebars dependecy * add tab_properties route and file to use the ConceptDetailsComponent * add conditions to adapt ConceptDetailsComponent * Migrate properties file * Fix bug in url * Add the deleted %div * Creation of new PropertiesController and View * Remove all handlebars * Fix bug when an ID contains "#" so that the data can be displayed * transform properties jquery code to turbo and stimilus js * optimize the ontologies properties action to not fetch all properties --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: portal errors notifications (#385) * Remove the dead code and update error function * add internal_server_error function * add the letter opener config to test emails in local * add the unit test of notifier controller * Add error view to make the backtrace readable * put the letter opener in the development mode * Show the Current user or the request IP * Feature: add local api tests CI (#384) * remove old file and config no more used * add bash scripts to run and stop an ontoportal api using docker images * add test UI against a remote api CI * add a docker build CI with a new Dockerfile * add running UI test against a local API CI * add bash script to run ontoportal web ui in dev mode or run tests * update docker compose file to not build locally and use the publisher image * update ontoportal script to add help and rewrite it using functions * allow hosts in development environment * make testportal and ontoportal have the same theme * update ontoportal script to add reset-cache option * update bioportal config sample to include ui_theme and homepage & footer configs * add a mysql healthcheck to the docker compose * fix linkfield component using a no more existent config variable * add current url in portals errors notification (#387) * Feature: add integration tests & Ontology process information alert (#386) * show ontology groups in the ontology summary page * updatr account page to show empty state of Subscriptions, Submitted and projects * don't stop the API server after running the tests * add chrome-server service to run integration test * add users creation & login flow tests * add submission creation system tests * add system tests CI * fix development environnement not raising exception * if submission status icon helper with the correct conditions * not show the ontology data section if the submission is not ready * add an alert message in summary page, to give information about this submission statueses * add remote api of Stageportal tests CI * add option to the ontoportal script to run test with a remote API * fix ontologies with no submissions summary page state * build docker images in github hub in addition of docker * add test coverage report * fix ontology viewer sections order * Feature: add user agent usages code and UI (#365) * add user agent usage code and UI * add update agents usages action and UI * fix agent search input style * show agent attributes metadata in usages form * fix concepts labels for SKOS and Ontologies * fix submission edit error state not showing agents values * hide in the agents form the organization fields if not selected * remove the enforced capitalization of agent name display * fix agents usages update with new select input interface * disable the agent delete button if the agent is used * fix the display of definitions and parent (#389) Co-authored-by: Syphax Bouazzouni <[email protected]> * Fix: summary page missing properties and fix the edit of copyRightHolder agent (#390) * show ontology groups in the ontology summary page * updatr account page to show empty state of Subscriptions, Submitted and projects * don't stop the API server after running the tests * add chrome-server service to run integration test * add users creation & login flow tests * add submission creation system tests * add system tests CI * fix development environnement not raising exception * if submission status icon helper with the correct conditions * not show the ontology data section if the submission is not ready * add an alert message in summary page, to give information about this submission statueses * add remote api of Stageportal tests CI * add option to the ontoportal script to run test with a remote API * fix ontologies with no submissions summary page state * build docker images in github hub in addition of docker * add test coverage report * fix ontology viewer sections order * fix summary icons, by adding publication, title and enforce disabled * add admin block helper * add to the ontology viewer private, hasLanguage and retired badges * add a title to the json and subscribe button to give their usages * fix summary usage and methodology properties not showing * add :award to summary page "usage" block * add :exampleIdentifier to the summary identifiers block * add ::associatedMedia, :bugDatabase, :mailingList, :uriRegexPattern to summary links block * add :toDoList and :notes to summary methodology block * add a an admin block in the summary page for the configuration metadata * lazy load the ontology view section in development mode for better perf * add the abstract to ontology summary description block * update the summary page description text to integrate multiple metadata alternative, hasLicense, prefix, namespace, metadataVoc * add ontology edit metadata tests * fix browse not working in local french * remove reset button in submission forms * fix metrics evolution popup title * add in summary page show all metrics popup * don't humanize agent name and show them as saved * fix the new hasOntologyLanguage badge for the one that are nil * fix landscape average metrics all NaN * fix metadata curator returning content missing * fix subscribe button unwatch state title * hide topnav "Recently Viewed" if empty * fix user edit form button style * add useGuidelines and copyrightHolder to the ontology licenses popup * add submission hasDomain to the summary general…
* update the maintenance page * use in the footer portal name configuration variable instead of UI_THEME * put in all metadata modal title to have the filled percentage metric * simplify the all metadata modal table to show only the filled metadata
…r paths (#464) * escape user id and include all attribute when fetched in the user paths * add bugsnag configuration to production
…t edition showing 0 usages after saving (#468) * add apikey for the ontology description icon links when needed * fix agent admin editing reseting the usage count after save
…and UI JS code migration (#432) * Feauture: Update admin page and fix google analytics (#422) * remove no more used ontologies.js file * add id argument to the alert component * justify center tabs items if no actions button are pinned_right * install latest version of Chart JS and create chart_component helper * add Analytics section to the admin page * catch the case were the analytics are not existent * Fix: Google Analytics 4 tag (#424) * revert the change in ontologies_analytics to use last month analytics * Merge pull request #271 from ncbo/feature/ga4-migration/270 Universal Analytics -> Google Analytics 4 migration * Feature: add SPARQL endpoint UI (#427) * add yasgui dependency to have a SPARQL editor * add sparql ednpoint proxy action * add SPARQL section to the admin page * add SPARQL section to the ontology viewer * Feature: add satistics page (#428) * upgrade the chart helpers to have more options as show legend, title, .. * add statistics page * add link to statistics page in home page * Fix: remove old JS dependecies (#429) * remove select2 dependency * remove jquery.tooltip dependency as not used * remove fg.menu dependency as not used * remove the usage of the of chart-js gem replaced with esbuild * remove jquery dependency scrollTo and replaced with native JS * remove no more used JS dependencies * remove no more used JS code * remove margin notes remaining code * optimize the json search action * Feature: add synchronize groups to slices button in admin page (#418) * update the js file, add button and ajax action * add synchronize_groups function and GROUPS_SYNCHRONIZE_URL url * add the route of synchronize_groups * remove old jquery validate code of groups --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Feature: Add icons to display orcid, and affiliations in agent tooltip (#420) * Add icon to display orcid, and affiliations in agent tooltip * add organization dependencies icon in agent tooltip * Feature : create a new component to display tree views (#307) * Add tree link component and refactor the code * update concept controller to use the tree component and remove old code * use tree link component for concept list by date and collection * remove old code no more used * update tree link component to be have more generic arguments * update tree view component to use tree link component * add tree component helper * make tree_infinite_scroll use tree view component * add concept tree view helper and use in concept controller to show tree * update concept list and date sorted views to use tree view component * add a card style to the schemes and collection tree views * use the tree view component for the schemes and collections * migrate properties tree to the ruby tree view component * remove no more used properties tree js code * put again the removed splitter assets blocking history to work * remove this usage of histroy.js and replace with the native one * remove jquery simple tree dependency * add tree view links controller tests --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Feature: update Widgets section design to remove thickbox (#430) * remove old code of reviews feature * update widgets section style to to remove thickbox dependecy * remove jQuery block UI dependecy replaced with the Turbo progress bard * Feature: Remove Facebox from instances, admin submissions, categories, groups and mappings (#431) * migrate instances modal from facebox to turbo modal * migrate admin submission modal from facebox to turbo modal * migrate mapping modal from facebox to turbo modal * migrate categories from JS code to ruby and remove facebox usage * migrate groups admin JS code to ruby and remove the usage of facebox * remove the dependency facebox * replace js required fields validation with native html require * force popup link svg to always be filled with the primary color not dark * remove agent table list partial move its content to directly index * move admin action buttons to the the backend * migrate admin user table to backend and remove the js code * clean admin routes * migrate agents, users, groups, and categories tables to table component * remove facebox dependency files * Feature: Update search page design (#412) * search page new icons * search page new input style * search page new input and advanced options html * search page js controller * Make search result component and add it to search page * add search result subcomponent * Add search page logic * show results id correctly in search page * display ontology name and acronym correctly in search page * make search elements links work in search page * fix api query param error in search page * show search results definition correctly * make search page ui take all width * add empty state to search page * add search result component js * Filter Perflabs to take the most close to the search input in search page * use turbo rails in search page * get all the results from the search api in one page in search page * make search page filters work * Add ontology reuses logic * make details and visualize buttons work in seach page * add class reuses to search result component in search page * add reuses to result structure in search page * add reuse decendents in search page * Make search result component and add it to search page * add search result subcomponent * Add search page logic * show results id correctly in search page * display ontology name and acronym correctly in search page * make search elements links work in search page * fix api query param error in search page * show search results definition correctly * make search page ui take all width * add empty state to search page * add search result component js * Filter Perflabs to take the most close to the search input in search page * use turbo rails in search page * get all the results from the search api in one page in search page * make search page filters work * Add ontology reuses logic * make details and visualize buttons work in seach page * add class reuses to search result component in search page * add reuses to result structure in search page * add reuse decendents in search page * fix bugsnag gem configuration * simplify search result component by inferring some arguments * use d-flex bootstrap call instead options in the search result component * simplify the search parameters key naming to avoid duplication * convert all the functions the bp_search.js to search_aggregator.rb * extract details and vizualize buttons to functions, in search result component * fix ontologies filter and remove categories filter in search page * Clean search result component stimulus controller code * remove categories translation on search page * extract reveal ontologies buttons to a function in search result component * remove duplicated annotator_recommender_form function from home controller * make a generic stimulus controller for reveal by id * make a stimulus controller for reveal with double button * extent reveal component controller to combine all reveal controllers * remove stimulus reveal package * fix the display of obsolete class (#419) Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: new Search page issues (#436) * fix search page query bug * fix search page filters issues * search resuses decendences reveal issues in search page * make search page multilang * Fix: home page issues (#417) Fix home page issues * Fix: content and aesthetics globally to add help text and action icons (#435) * open the link after clicking in a new tab * add the icon of service link * update the text * update the section Ontology relations network * fix the display of portal name * capitalize items in support section * add fullscreen icon * convert dates * Remove points in feeback page * fix local variables * add icones (edit/delete) in action * change the display of items in property tab * fix style of fair scores button * add a logic to open DropdownContainerComponent * use has_ontology_language_input to refactor * change the text of tooltip * change the title of modal * add help text to switch input component * add helper text in edit submissions and delete the icon of url * fix the full screen width and style * change the text in the sort by * make the admin page on the center * fix the style of some classes on the admin, browse and edit submission page * fix bug of the wrong uri in users section of admin page * add a function to generate link_title with style * add the modified line * add the removed line * Add a style to center the actions in both cases, whether the user is logged in or not. * delete the change of style in tab_container * add help text under version information in edit submission * change convert_dates into concept details component * remove convert_dates from the wrong place * move generate_link_title to right place * remove the wrong modification * add new component IconWithTooltipComponent * use the IconWithTooltipComponent to display icons with text * adjust the icon size to be compatible with all icons in the portal * remove the not used functions * update the select in edit submissions with reveal component * remove the show icon condition from summary section component * add fairness_link function into helper * Reuse fairness_link with style * add functions for edit and service action * fix submission success message typo * update reveal component to handle multiple containers * update ontology_language, visibility, status and view of to use the new reveal * rescue concept details converted date parsing exceptions * use generic variable for the colors of the ontology relation title * make the notes metadata attribute long text * add custom help text to deprecated metadata property --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Feature: Update recommender page design (#433) * make radio chip component * udpate the design of recommender page inputs * make radio chip selected initially * make number component and add it to lookbook * add recommender page advanced options * add advanced options revreal to recommender page * handle recommender keywords input text area in recommender page * add results table in recommender page * add sort parameter to option component * make progress bar component * fix recommender page results section style * display recommender page results * add default sorting column in table component * heighlight the row with max final score in recommender page * highlight selected annotations in text recommendation area in recommender page * make edit work in recommender page * make filters work in recommender page * do logic of ontologies and ontologies sets on recommener page * define constraints for the inputs (mins and maxes) in recommender page * limit recommender input text size by 500 char * make insert sample text work in recommender page * add cite button in recommender page * remove get annotations button in recommender page * add recommender cite url * use stimulus values in table component * clean recommender page controllers code * add recommender page texts to local lang files * make advancced options open by default when it's not empty in recommender page * clean recommender page controllers code * remove recommender old jQuerry file * fix bioportal config test to add the new $HOME_PAGE_LOGOS * put again the custom class argument in the table component --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Feature: Add URL resolvability checker (#463) * add URL resolvability check icon component * add the resolvability check icon to link field component * optimize metadata curator result rendering by using collection * add click action event in the reveal component * extract check resolvability helpers file * add check resolvability tool page * add copy to clipboard component * use clipboard component an account copy apikey * remove unused uri.js file * add copy to clipboard option to the link fields component * fix check resolvability to do follow redirection by format * add clipboard and resolvability to concept details pages * move check_resolvability action to CheckResolvabilityController * move check_resolvability_container to components helper * fix link field component style width after adding the two action icons * fix SKOS collections colors not removing all dots (#465) * Fix: Add slider component to recommender page (#466) * clean recommender controller from unused code * Make ‘select ontologies’ before ‘max ont set’ * Maximize the limite of the input text length in recommender page (9678 char) * Add text area resize to recommender input * make range slider component * validate max_elements_set input in recommender page (valid values are 2,3,4) * Add json and annotator buttons in recommender page * Feature: Add keywords tooltip in Recommender page (#471) * Add keywords tooltip in recommender page * change annotator button text in recommender page * Fix: metadata exporter to different formats (CSV, xml, json and ntriples) (#469) * fix ontology viewer tabs style * extract content_metadata_attributes helper from submissions component * add html_safe to date time component to handle the console warnings * add metadata exporter controller * refactor metadata downloader stimulus to fix prefixes and add csv * remove show_additional_metadata action and code * humanize admin page tabs tabs titles * Feature: enable multilingual to the properties tab (#470) * enable multilingual to the properties tab * handle the case propertyid is nil error --------- Co-authored-by: SirineMhedhbi <[email protected]> Co-authored-by: Bilel Kihal <[email protected]>
* extract find_user method the user controller with correct id escaping * add user reset password test
* add link to see result details of the url resolvability check * fix vizualization widget not showing code section * fix metrics graph evolution to use chart component * re-enforce the sparql query security for no admin users * fix collection show members using the wrong params name * remove unused history routes
…w Ontologies selector & New Annotator UI page (#488) * Fix: Search page issues (#483) * fix search page typos * add icons for reuses and more from ontology buttons in search page * display each definition in a new line for serch results * Feauture: internationalization part 2 - FAIRScore details, Ontology viewer, browse, metadata curator bulk edit pages (#473) * internationalization fairescore details page * internationalization of ontology_views page * internationalization of edit ontology page * internationalization of browse page * Feature : internationalization part 3- Feedback, Visits, Concepts list and jump_to and annotator plus (#474) * internationalization of annotatorplus/index page * internationalization of notifier/feedback page * internationalization of concepts_browsers/concept_list page * internationalization of ontologies/visits page * internationalization of additional_metadata page * internationalization of concepts_browsers/jump_to page * Feature: internationalization part 4 - Submit success page and Ontology metrics, relations, submissions sections (#475) * internationalization of submit_success ontology * internationalization of ontology_submissions_section page * internationalization of ontology_relations_network page * internationalization of ontology_metrcis_section page * internationalization of scheme page * Feature: internationalization part 5 - FAIRScore, Concept tree and details , widgets, ontology description pages (#476) * internationalization ontologies/fair_score file * internationalization of submission_location_form file * internationalization of concept_tree file * internationalization of ontology_fairness_section file * internationalization of visualize file * internationalization of widgets file * Feature: internationalization part 6 - Metrics, Summary, Scheme and Virtual appliance page (#477) * internationalization of sections/metadata file * internationalization of sections/metrics file * internationalization of schemes/scheme file * internationalization of ontology_fairness_section file * internationalization of virtual_appliance/index file * Feature: internationalization part 7 - Projects page (#478) * internationalization of form projects file * internationalization of edit projects file * internationalization of new projects file * internationalization of show projects file * internationalization of admin/licenses/notice file * Feature: internationalization part 8 - groups page (#479) * internationalization of form file * internationalization of group file * internationalization of edit file * internationalization of index file * internationalization of new file * Feature: internationalization part 9 - Categories page (#481) * internationalization of form file * internationalization of group file * internationalization of edit file * internationalization of index file * internationalization of new file * internationalization of form file * internationalization of edit file * internationalization of index file * internationalization of new file * internationalization of category file * Feature: internationalization part 10 - login and statistics pages (#482) * internationalization of lost_password file * internationalization of lost_password_success file * internationalization of statistics/index file * Feature: internationalization part 11 - users page (#484) * internationalization of edit file * internationalization of show file * internationalization of index file * Feature: internationalization part 12 - notes page (#487) * internationalization of new_comment page * internationalization of note_proposal page * internationalization of note_line page * internationalization of thread page * internationalization of notes/replay pages * Feature : internationalization part 1 - Feedback, Metadata curator, Ontology new, Feedback and Home pages (#472) * internationalization of feedback pages * internationalization of home page * internationalization of new ontology page * internationalization of matadata tab file * delete insert_sample_text and add see_details * Feature : internationalization part 13 - mappings page (#489) * internationalization of count file * internationalization of form file * internationalization of show file * internationalization of loader file * internationalization of loaded_mappings file * internationalization of mapping type selector file * internationalization of show line file * internationalization of mapping table file * Feature : internationalization part 14 - agents page (#490) * internationalization of agent file * internationalization of form file * internationalization of index file * internationalization of agent_usage file * Feature: Update annotator page design (#467) * make radio chip component * udpate the design of recommender page inputs * make radio chip selected initially * make number component and add it to lookbook * add recommender page advanced options * add advanced options revreal to recommender page * handle recommender keywords input text area in recommender page * add results table in recommender page * add sort parameter to option component * make progress bar component * fix recommender page results section style * display recommender page results * add default sorting column in table component * heighlight the row with max final score in recommender page * highlight selected annotations in text recommendation area in recommender page * make edit work in recommender page * make filters work in recommender page * do logic of ontologies and ontologies sets on recommener page * define constraints for the inputs (mins and maxes) in recommender page * limit recommender input text size by 500 char * make insert sample text work in recommender page * add cite button in recommender page * remove get annotations button in recommender page * add recommender cite url * use stimulus values in table component * clean recommender page controllers code * add recommender page texts to local lang files * make advancced options open by default when it's not empty in recommender page * clean recommender page controllers code * init annotator page new design * display annotator page results * add match type in annotator page * add context to annotator results table * add results count in annotator page * Add annotator advanced options * display parents in annotator results * add score to annotator results * group contexts by concept in annotator results * remove unnecessary create method from annotator controller * goup results by class name in Annotator page * clean annotator controller code * clean annotator stimulus controller code * fix annotator page css class names * add empty state in annotator page * display annotator results counts * adding the scores of same class in annotator results * make ontologies filter work in annotator * make semantic types filter work in annotator * make prefrences filters work in annotator * make score_threshold and confidence_threshold filters work in annotator * add tooltip param to input field component * add tooltip param in select component * make fast context filter work * remove annotator old js file * fix annotator page hard coded colors * run annotator and annotatorplus with the same code * remove annotator plus old files * run ncbo annotator using the same code of annotator * remove ncbo annotator old files * put annotator page texts in local lang files * clean annotator js controller code * remove old annotator controller code * make advanced options open when it's not empty in annotator * add annotator bottom actions * remove duplicated icon rdf.svg * clean annotator stimulus controller * use dynamic apiKey in Annotator controller * extract url_to_endpoint method to application controller * make semantic groups filter work in Annotator * replace Cite Annotator and Recommender hard coded values * replace %a html tags with link_to tags in Annotator page * minimaze table component params * remove recognize partail words filter from annotator page * clean annotator controller code * pass NCBO_API_KEY in ncbo_annotator_plus * add a helping comment in annotator controller * make api params clear in annotator controller * Fix: Tests issues (#515) Fix tests issues * Fix: Auto fill ontology viw of input when we click the '+' button in summary page (#512) * auto fill ontology viw of input when coming form summary page * fix view of input in upload ontology and edit submission * Feature : internationalization part 15 - licenses, change_request, check_resolvability, errors and collection pages + change request, collections and check resolvability heplers (#491) * internationalization of licenses/form file * internationalization of change_request files * internationalization of errors files * internationalization of check_resolvability file * internationalization of collection file * internationalization of check resolvability helper * internationalization of change requests helper * internationalization of collections helper * Feature : internationalization part 16 - admin pages, footer appliance file (#493) * internationalization of admin files * internationalization of footer appliance file * Feature : internationalization part 17 - concepts and submissions pages (#495) * internationalization of concepts files * internationalization of show/concepts file * internationalization of submissions files * update of en.yml file * internationalization of submissions controller * update en.yml --------- Co-authored-by: Bilel KIHAL <[email protected]> * Feature : internationalization part 18 -Landscape, visits, properties, layout and ontologies files (#496) * internationalization of faire_score_landscape file * internationalization of notices file * internationalization of ontologies/views file * internationalization of properties/show file * internationalization of visits file * fix the bug of syntaxe in widget file * update the en.yml file * fix visits issue in home page internationalization --------- Co-authored-by: Bilel KIHAL <[email protected]> * Feature: Add an explicit search button to the search page (#504) * Auto search when we change advanced options in search page * add an explicite button in search page * remove advanced options id in search page * Fix: display of content sections in summary page by adding option to disable text truncate (#514) * add truncate option * remove duplicated code * update and use link? function --------- Co-authored-by: Bilel KIHAL <[email protected]> * Feature: make home page bubbles clickable (#513) * Feature : internationalization part 23 - Helpers: admin, agents, components, fair score, mappings, notes, ontologies, schemes and submission inputs (#503) * internationalization of admin helper * internationalization of agent helper * internationalization of fair score helper * internationalization of ontologies helper * internationalization of schemes helper * internationalization of notes helper * internationalization of mappings helper * internationalization of components helper * internationalization of submission inputs helper * update of en.yml file * remove not working translation in ontologies helper --------- Co-authored-by: Bilel KIHAL <[email protected]> Co-authored-by: Syphax bouazzouni <[email protected]> * Feature : internationalization part 19 - All components (#498) * internationalization of search input and file input component * internationalization of language selector component * internationalization of license field component * internationalization of browse card component * internationalization of ontology search component * internationalization of text area field component * internationalization of loader component * internationalization of progress pages component * internationalization of ontology subscribe button component * update the en.yml file --------- Co-authored-by: Bilel KIHAL <[email protected]> Co-authored-by: Syphax bouazzouni <[email protected]> * Feature : internationalization part 20 - Controllers: categories, groups, admin, agents, annotator, annotatorplus ,application, collections, concepts, home, label_xl, landscape + application helper (#500) * internationalization of categories controller * internationalization of groups controller * internationalization of agents controller * internationalization of annotator controller * internationalization of collections controller * internationalization of home controller * internationalization of admin controller * internationalization of application controller * internationalization of concepts controller * internationalization of landscape controller * internationalization of annotatorplus controller * internationalization of label_xl controller * update of en.yml file * internationalization of application helper --------- Co-authored-by: Bilel KIHAL <[email protected]> Co-authored-by: Syphax bouazzouni <[email protected]> * Feature : internationalization part 22 - Controllers: ontolobridge, ontologies metadata cruator, precache, projects, schemes, search, users and virtual appliance (#502) * internationalization of ontolobridge controller * internationalization of metadata cruator controller * internationalization of schemes controller * internationalization of search controller * internationalization of users controller * internationalization of projects controller * internationalization of precache controller * internationalization of virtual appliance controller * update of en.yml file --------- Co-authored-by: Bilel KIHAL <[email protected]> Co-authored-by: Syphax bouazzouni <[email protected]> * Feature : internationalization part 21 - Controllers: language, login, mappings, notes and ncbo annotator plus + MultiLanguages helper (#501) * internationalization of mappings controller * internationalization of notes controller * internationalization of login controller * internationalization of language controller * internationalization of ncbo annotator plus controller * update of en.yml file * internationalization of MultiLanguages helper * skip annotator page weird test * put back annotator page test * include translation helper in notes controller * create a class function for controllers translating * remove binding.pry in notes_controller.rb --------- Co-authored-by: Bilel KIHAL <[email protected]> Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: internationalization of french part (#519) * update the fr.file * remove the duplicated keys in en.yml file * internationalization of ontologies helpers * fix the bug of missing translate error * Internationalization of remaining files * remove duplicated keys and update the en.yml file * remove duplicated keys and update the fr.yml file * fix typ in the internationalization of components.by * update bin/run_api to use the development branch ontoportal_docker --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Feature: Update stageportal ui theme colors and extract svgs colors (#518) * update stageportal ui theme colors * add a loading animation to home twitter news * fix harded coded colors issues in the ui * fix selector component spacing issue * use error color css variable in the remaining hardcoded places * replace hard coded by dynamic colors in all icons --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: add target blank to summary page link to open in a new window (#531) * Feature: Add a "Ontoportal instances" section to point to the other portals (#524) * add the ontoportal_instances in all languages * add the logos of all portals * add the ontoportal section in home page * add PORTALS_LOGOS to config file * remove unused images * fix bug * add PORTALS_INSTANCES variable to the test config file --------- Co-authored-by: Syphax bouazzouni <[email protected]> * fix admin routes that don't work with namespace (#541) * Feature: improve search input component to add key events (#499) * make arrow up down and enter work in search input component * add search button for home and nav search --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: Harmonize API and UI urls in Search, Annotator and Recommender pages (#534) * create a stimulus controller to customize forms urls * harmonize search page api and ui urls * harmonize recommender api and ui urls * harmonize annotator api and ui urls * clean form url controller code * Feature: Update ontologies selector component (#508) * init ontologies selector design * ontologies selector options * display ontologies in ontologies selector * finalize ontologies selector design * put ontologies selector in the modal component * fix ontologies result display in ontologies selector * Make ontologies selector search bar work * show ontologies results count in ontologies selector * make groups filter work in ontologies selector * make filter by categories work in ontologies selector * add ontologies selector loading animation * make submission related filters work for ontologies selector * make select all work in ontologies selector * make retired ontologies and views filters work in ontologies selector * fix ontologies style in ontologies selector * add unselect all in ontologies selector * show tab selected checks count in ontologies selector * Clean ontologies selector js controller code * Add loading animation to ontologies selector * make ontology selection work in ontologies selector * add clear selection to ontologies selector * make ontologies selector component * remove duplicated cross icon in ontologies selector * clean ontologies controller code * use rails cache in ontologies selector * replace use cases of the old ontologies selector * delete old ontologies selector code * convert ontologies selector ui component into a helper * replace the usages of the ontologies selector ui component by the ontologies selector helper * replace 'selector' by 'ontologies_selector' in ontologies controller * add internationalisation to ontologies selector * remove the usage of static cache in ontologies selector * extract save and cancel buttons to a reusable helper in ontologies selector * undo extract save and cancel buttons to a reusable helper * add another type to the loader component that uses the style of the three dots * don't use display all in submissions fetching to make it faster in ontologies controller * remove ontology_picker_single code and replace its usages * give type argument in loader component a more significant value * replace ontologies selector text input by text input helper * replace ontologies selector chips components by chips components helpers * extract save and cancel buttons to helpers in the ontologies selector * fix ontologies selector name fild in search annotator and recommender page * fix text input helper label --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Feature: Add contextual go to API icons in admin sections (#530) * create function to render rounded icon * use the function of rounded button into the admin sections * fix the color of rounded button icon * add api key to correct the urls * fix the style of json rouned button * rename render_rounded_button_with_style to rounded_button_component * Feature: Update ontologies selector component (#508) * init ontologies selector design * ontologies selector options * display ontologies in ontologies selector * finalize ontologies selector design * put ontologies selector in the modal component * fix ontologies result display in ontologies selector * Make ontologies selector search bar work * show ontologies results count in ontologies selector * make groups filter work in ontologies selector * make filter by categories work in ontologies selector * add ontologies selector loading animation * make submission related filters work for ontologies selector * make select all work in ontologies selector * make retired ontologies and views filters work in ontologies selector * fix ontologies style in ontologies selector * add unselect all in ontologies selector * show tab selected checks count in ontologies selector * Clean ontologies selector js controller code * Add loading animation to ontologies selector * make ontology selection work in ontologies selector * add clear selection to ontologies selector * make ontologies selector component * remove duplicated cross icon in ontologies selector * clean ontologies controller code * use rails cache in ontologies selector * replace use cases of the old ontologies selector * delete old ontologies selector code * convert ontologies selector ui component into a helper * replace the usages of the ontologies selector ui component by the ontologies selector helper * replace 'selector' by 'ontologies_selector' in ontologies controller * add internationalisation to ontologies selector * remove the usage of static cache in ontologies selector * extract save and cancel buttons to a reusable helper in ontologies selector * undo extract save and cancel buttons to a reusable helper * add another type to the loader component that uses the style of the three dots * don't use display all in submissions fetching to make it faster in ontologies controller * remove ontology_picker_single code and replace its usages * give type argument in loader component a more significant value * replace ontologies selector text input by text input helper * replace ontologies selector chips components by chips components helpers * extract save and cancel buttons to helpers in the ontologies selector * fix ontologies selector name fild in search annotator and recommender page * fix text input helper label --------- Co-authored-by: Syphax bouazzouni <[email protected]> * move the admin go to api button next to the action buttons --------- Co-authored-by: Syphax bouazzouni <[email protected]> Co-authored-by: Bilel Kihal <[email protected]> * Feature: Make the word "Ontology" configurable in all the portal (#520) * update the fr.file * remove the duplicated keys in en.yml file * internationalization of ontologies helpers * fix the bug of missing translate error * Internationalization of remaining files * remove duplicated keys and update the en.yml file * remove duplicated keys and update the fr.yml file * add the logic to replace ontology with semantic term * fix the bug of missing translation * fix the bug of missing translation * add the semantic term in it and de files * resolve the problem of translation terms * include ApplicationHelper into components.rb to use t(*args) function * add vocabulary, terminology and semantic_artefact terms in all languages * add Resource term to config file * add InternationalisationHelper * Remove the logic of configuring the ontology from the ApplicationHelper * include the InternationalisationHelper into the components.rb * fix the bug of syntax error * eliminate the use of the words ontology and semantic resource together * remove unused code * add documentation to the function * add resource term variable to bioportal config * add comment in all languages to explain how to use the resource term * handle the case of the $RESOURCE_TERM variable is not set --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Feature: update metadata curator design and fix show all submissions (#551) * Feature: Update ontologies selector component (#508) * init ontologies selector design * ontologies selector options * display ontologies in ontologies selector * finalize ontologies selector design * put ontologies selector in the modal component * fix ontologies result display in ontologies selector * Make ontologies selector search bar work * show ontologies results count in ontologies selector * make groups filter work in ontologies selector * make filter by categories work in ontologies selector * add ontologies selector loading animation * make submission related filters work for ontologies selector * make select all work in ontologies selector * make retired ontologies and views filters work in ontologies selector * fix ontologies style in ontologies selector * add unselect all in ontologies selector * show tab selected checks count in ontologies selector * Clean ontologies selector js controller code * Add loading animation to ontologies selector * make ontology selection work in ontologies selector * add clear selection to ontologies selector * make ontologies selector component * remove duplicated cross icon in ontologies selector * clean ontologies controller code * use rails cache in ontologies selector * replace use cases of the old ontologies selector * delete old ontologies selector code * convert ontologies selector ui component into a helper * replace the usages of the ontologies selector ui component by the ontologies selector helper * replace 'selector' by 'ontologies_selector' in ontologies controller * add internationalisation to ontologies selector * remove the usage of static cache in ontologies selector * extract save and cancel buttons to a reusable helper in ontologies selector * undo extract save and cancel buttons to a reusable helper * add another type to the loader component that uses the style of the three dots * don't use display all in submissions fetching to make it faster in ontologies controller * remove ontology_picker_single code and replace its usages * give type argument in loader component a more significant value * replace ontologies selector text input by text input helper * replace ontologies selector chips components by chips components helpers * extract save and cancel buttons to helpers in the ontologies selector * fix ontologies selector name fild in search annotator and recommender page * fix text input helper label --------- Co-authored-by: Syphax bouazzouni <[email protected]> * fix metadata curator show all submissions options that was not working * disable metadata curator bulk edit button see if re-enable in futur * use table and button components in the curator page --------- Co-authored-by: Bilel Kihal <[email protected]> * Feature: Add view badge to the summary header section (#526) * Distinguish views on the summary page * fix image position issue in summary page * Fix: Ontoportal instances home section style issue (#552) * resolve a merge conflict in the check resolvability helper * fix ontoportal instances home section style * save the check_resolvability_message in the text variable --------- Co-authored-by: Syphax bouazzouni <[email protected]> * allow special chars in annotator's input text (#553) Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: Some bugs in the pre-release 2.7.4 including internationalisation and code cleaning (#554) * remove old no more used controller * correct the casing of the imported stimulus controller * remove the internationalization of template string the search components * update internationilaztion helper to add the class method version * clean the include of internationalisation helper in some files * remove unused helper * remove the switch from the metadata curator * update the search input stimulus controller to add searchEndpoint value * clean some old usage to jquery chosen to prepare its total removal * fix project index edit button translation missing * handle the case of corrupted agents in the landscape * catch the missing translation in the overided internationalization * fix duplicated translations * complete missing translations and clean the en.yml file * complete and clean the fr.yml file * fix translation upcasing * fix internationlization not displayed well as sanitized * re-write the french translations * add edit submission french translations * Fix: pre release 2.4.7 global bugs (#556) * fix transparent home page icons * fix transparent icons in the browse page * fix summary page icons styles * Fix recommender style issues * Fix annotator style issues * Fix home fairness json link * fix edit ontology style issues * fix fair score link in summary page * fix summary page empty categories and subject * fix footer email icon link * fix summary page zoom icon * fix broken info tooltip component * display tooltip on truncated links in summary page * add tooltip to truncated groups in summary page * fix chip button icon color * fix mailing list subscription button in account page * fix browse page debug admin color issue * fix the count link in admin page for categories and groups tables * fix agent search autocomplete * fix home page recommender annotator section issue when we're in french * fix duplicated application key in the translation files * fix notes tab style * fix landscape page ontologies selector * use helpers.escape instead of CGI.escape in home_controller * don't display select collection when there is no collection * Fix O'faire summary details modal style * enforce the chips button to be inlined otherwise will break to new line * fix reverted translation after merging to development * rename fix_array_format helper show_ontology_domains --------- Co-authored-by: Syphax bouazzouni <[email protected]> * fix: running local docker api test CI * fix: login page icons size --------- Co-authored-by: Bilel Kihal <[email protected]> Co-authored-by: SirineMhedhbi <[email protected]> Co-authored-by: Bilel KIHAL <[email protected]>
…earch json icon (#563) * Fix: Annotator fast context special chars issues & statistics page syntax error (#561) * fix statistics page syntax error * update ontoportal instances home section title * fix fast context option in annotator page * remove special chars from annotator's input on submit to avoid errors * Feature: Add json button to search page (#562) * add json button ui to search page * extract json_link method from annotator controller to application controller * build the search page json link using json_link method * move the search json button down besides the advanced options button * remove this usage of api_params instead of direct params in search controller --------- Co-authored-by: Syphax Bouazzouni <[email protected]> --------- Co-authored-by: Bilel Kihal <[email protected]>
…e mappings cloud and OntoPortal URIs (#564) * Fix: Annotator fast context special chars issues & statistics page syntax error (#561) * fix statistics page syntax error * update ontoportal instances home section title * fix fast context option in annotator page * remove special chars from annotator's input on submit to avoid errors * Feature: Add json button to search page (#562) * add json button ui to search page * extract json_link method from annotator controller to application controller * build the search page json link using json_link method * move the search json button down besides the advanced options button * remove this usage of api_params instead of direct params in search controller --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Feature: Adding Content Finder Page (#511) * Adding Content Finder Page * use ontologies selector instead of the url input * Change the controller to add use the accept headers - use the Net::HTTP instead of Linked::Client::HTTP to use the accept header * use ontologies selector in the content finder page * use the rest_url helper instead of the global variable REST_URI * remove content finder link from the topnav * close the array items in navitems method that causes an error * use Faraday instead of Net::HTTP * Remove result in content_finder_controller and use this.element.textContent * use this.contentTarget.textContent instead element in the content finder * Add html view using the concept details component * use tool layout for the content finder page --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * Feature: Add ontology concepts exporters to diffrent formats (xml, ntriples, turtle) (#547) * add feature to display resouce content in different formats * Add download and copy buttons to the raw data section * Add css to highlight the content of turtle and ntriples * Add the copy functionality to the resource raw data for formts: json, xml, ntriples and turtle * Remove the clipboard component and change the HTML title to Raw Data * Add clipboard component to the resource-content * Use Net::HTTP instead of Linked::Client::HTTP to include accept header * Add the content formats for instances and Properties * Remove copy_concept_content method in clipboard component * Use the highlight-js in the metadata controller and remove content_finder_controller * Remove code duplication for content formats - add content_formats method in application helper and use it for concepts, properties and instances * Remove content finder controller from index.js * Small fix: remove a condition in metadata_downloader * Add content_formats method to ontologies_helper and remove it from application_helper * Use Faraday instead of Net::HTTP * Add helpers for content finder controller * change content finder route to /ontologies/:acronym/:id/serialize/:output_format * Add concept details component to schemes and collections and fix code * rename the metadata downloader controller and remove the result value * update the concept formats tab UI to use icons and open in modal * update the content finder page code to re-use concept format code * update the content formats icons to use the primary color of the portal * extract commun code in content finder and concept formats in a concern * extract rdf highlighter component from concept format and content finder * rename the concept formats file and action to content_serlizer * in content finder don't call the backend serializer if format is html * fix the content finder container width * clean unused css code for the content finder * extract link_to_format_modal function in the concept details component * abstract the usage of a highlighter from the dependency highlight.js * update instance details page to use the concept details component --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Feature: update admin page UI to use vertical tabs (#566) * create vertical_tabs component * use the vertical tabs component in the admin page * enable sort in the users admin table * fix the padding and marging of the metadata administration page * fix analytics admin page locals * fix an error in table component after rebasing the branch * remove an unused file * remove the paths escaping in the actions of user admin table * add again the link to API for the users admin page * implement for the vertical tabs the option to save the selected tab * Feature: Add indexation admin page (#567) * create vertical_tabs component * use the vertical tabs component in the admin page * add search admin page * translate the admin search tab to french * create number_input helper for Input::NumberComponent * make the regular button hide the loading state after request processed * remove an unused file * translate the search admin page to french and english * Feature: Update search input in homepage and topnav to use the indexed content (#505) * fix styling warning of flex "end" deperection * fix search input text overflowing out of the container * add search content by rdfs label in additoon of skos prefLabel * implement search redirection to the good page * use ontologies_content_autocomplete helper in homepage and topnav * add the search ontology content route * clean unused agent search code from this branch * move the code in search helper to a concern * re-integrate search input loader code to show a loader while searching * Feature: Improve Browse page performance (#572) * optimize fetched attributes in the browse page in API mode * update ontologies browse to use API or Index * add cache for the fair_score and submission endpoint * internationalize a sentence in the browse and ontologies selector views * fix browse hasFormality and isOfType filters * prfioritize API filtring over the index in the browse page * fix a bug with edit submission returning nil error on submission * Feature: Add OntoPortal tools age (#559) * add tools page * extract search input in the search page to re-use in url checker tool * internationlize the tools page * add tools link to the footer * fix the tools page block widths * add top padding to tools cards * Feature: Add concepts mappings button in search page results (#569) * add mappings to concepts search results * fix mapping count in concept page * add new more from this ontology icon * move concept_mappings_loader function to mappings helper * remove indesired comment from _concept_mappings.html.haml file * put url escape functions in a separate helper * Feature: Add search bars for the instances, properties, collections and schemes pages (#550) * remove forgotten binding.pry's from the code * add the option to the tree link component to open in modals * add type value to properties show view * create paginated search list helpers * update instances UI and add search bar * add a search bar to the properties show page * add a search bar for the collections show page * implement a search bar for the schemes show page * add search icon to the concepts search box * fix a typo in the search content concerns * move _instace_details file to _details * remove top padding from the search bar in properties and instances tree * implement selected in the paginated_list_component * use link_last_part in the tree link component to get the label from id * prioritize the label from the id in the ontology search content * remvoe top padding from search bar in the schemes and collection tree * translate missing word in the properties details view * clean the ontologies routes by defining a scope a removing duplicates * remove agent code not relevant in this branch * fix left padding of collections, schemes and properties views * fix tree autoclicking for collections, instances and schemes * move the html rendering from the search concern to helper * fix tests after changing the routes * translate missing words in the new ontologies section search bars * remove no more used instances js code * Feature: Update concept mappings table style (#574) * fix search page search button style * fix search page json button style * update concepts mappings table style * add back chip button overflow wraping in concepts mappings table * Fix: submission date and summary not ready (#576) * fix the copy of creation date on new submission * fix ontology viewer to hidde the data sections if any submission ready * prevent infinite redirection in the ontology controller show action * Feature: Improve browse page search ranking and performance (#575) * enhance the ontology search input to include ontology names * fix new instances of page rendering * add browse page search ranking if API mode * include views by default to be cached and filter them by request after * remove no more used instances of controller and helpers code * Feature: Add terms and conditions to signup and footer links (#579) * put terms and conditions check box in register page in french and english * add terms and conditions link to the config file * make the acceptation of the terms and conditions required for user registration * update the style of the register form errors * add terms and conditions links to the footer * add terms_and_conditions to login_flows_test * fix login flow integration test after adding terms and conditions * clean the config sample file --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: new instance search feature to filter strictly only NamedIndividual (#581) * fix the paginated list selected value ti not select on each new page * fix instance search type filter to not include everything * Feature: Dynamic routes for ontologies content dereferencement (#568) * Add uri redirection for /ontologies/:acronym/:id to the appropriate page * small fixes: remove binding.pry and return resource_id in find_type_by_search * Add copy agroportal link functionality - this functionality is using the ClipboardComponent because it works the same but differ only in the content and icon - the clipboard component has been changed to accept title and icon * redirect to content finder page when no type is valid * Updated route to use redirect action instead of show_redirection * Use default icon and title arguments in the Clipboard Component * rename and internationalize clipboard component titles * small fix: remove % from svg icon * Add the copy title to the components section in en.yml and fr.yml * Show the generated uri when user hover over the copy link icon * Make the dynamic route content negotiable - based on the accept header we will - if "text/html" we will redirect to the agroportal page - else we will call the api and get the content serialized in the format specified and return it * update serialize content to return accept_header * translate copy_original_uri and copy_portal_uri to french * reuse search content concern in uri redirection concern * remove duplicate link_last_part method * update the ontology redirection action to use ontology URI if resource_id nil * update the content serializer to translate ntriples to an html table if asked for html format * in the ontology redirection by default redirect to content finder with in html format * remove the ":" from the copy the portal URI tooltip text * change the order of the icons in the link_with_action component --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Feature: Update mappings page (#538) * install D3 js and display a sample of ontology mappings bubbles * add zoom feature for mappings bubble view * fix bubble view style in mappings page * fix a scss selector in the annotator css that affects all a tags * mappings page layout * add ontologies select in mappings page * add upload new mappings in mappings page * add mappings table turbo frame * display the table view for ontology mappings * fix turbo frame issue in mappings page * Make the modal work in mappings table * improve mappings table view style * make mappings bubbles grow in a log way instead of a linear way * Highlighting mappings for the selected bubble * enable bubble deselection in mappings page * disable non highlighted bubbles in mappings page * show mappings page bubbles mappings in modal * make mappings page bubbles modal show correct values * customize mappings page bubbles tooltip * Link the table and the bubble view in mappings page * show highlighted bubbles with a gradient color related to the number of mappings * upload mappings in a separate tab * add concepts mappings to search page results * fix upload mappings tab style * display ontologies in ontologies selector * finalize ontologies selector design * put ontologies selector in the modal component * fix ontologies result display in ontologies selector * Make ontologies selector search bar work * show ontologies results count in ontologies selector * make groups filter work in ontologies selector * make filter by categories work in ontologies selector * add ontologies selector loading animation * make submission related filters work for ontologies selector * make select all work in ontologies selector * make retired ontologies and views filters work in ontologies selector * show tab selected checks count in ontologies selector * Add loading animation to ontologies selector * make ontology selection work in ontologies selector * make ontologies selector component * remove duplicated cross icon in ontologies selector * replace use cases of the old ontologies selector * convert ontologies selector ui component into a helper * replace 'selector' by 'ontologies_selector' in ontologies controller * enhance mapping page ontologies filtring style * add search page mappings count * add mappings bubble view to the ontology details page * make upload mappings work in mapping page * change seach results more ontologies button icon * fix concepts table mappings count * add a loading animation to the mappings bubble view * extract mappings page tab sections into partials * add internationalization to mappings page * clean mappings bubble view code * give more significant name for mappings ontologies table route * Clean mappings controller code * remove mappings search page part from main mappings PR * update new mapping form style * fix mappings section style and add search to its table in summary page * fix create new mapping for concept issue * fix upload mappings example style issue * update mappings ontologies table style * update the style the search filter of mappings table in mappings tab section * fix mappings bubble view modal link value * replace var by let in mappings visu stimulus controller * make hard coded mappings-bubble-view id by a dynamic * remove undesired #getLastPartOfUrl function from mappings vizu stimulus controller * extract #init_mappings_section_bubble_view() to a separate function in mappings visu stimulus controller * Add a default value for zoomRatio stimulus value in mappings visu controller * Add a default value for type stimulus value in mappings visu controller * refactor submit function in mappings visu stimulus controller * refactor select bubble method in mappings visu stimulus controller * put center_scroll method inside draw bubble method to not repeat code in mappings visu stimulus controller * refactor normalization ration function in mappings visu stimulus controller * use a better comprehensive helper for the empty modal in mappings page * add a legend for mappings bubble view * add back external mappings to mappings table view, and clean visu stimulus controller * move rest_url function to application_helper to be used by views * set table container box-sizing to not overflow if padding set * remove the new created to mappings actions and use the count action * remove the no more used loader action * move some mappings helpers and remove unused ones * use component helpers instead calling render & use reveal component * remove no more used partials in mappings * refactor and clean the mappings stimulus controller * extract from mappings stimulus the drawBubble logic in a file * fix mappings bubble view legend (bubble size) * fix search page results broken links (#583) * Fix: admin delete submission route (#585) * add back admin routes to fix delete submission * remove admin duplicated routes * Fix: Restore the new sample text of the annotator and recommender (#593) * restore the new sample text of the annotator and recommender * add french translation for annotator and recommender sample text * Fix: search results selected language (#595) * add language param to search results links * use helpers.request_lang instead of passing lang variable in search aggregator * make the selection of the closest preflabel to the query case unsensitive * Fix: new instance details page, properties selected property display and browse page ontology type filter (#596) * fix the auto selection of isOfType filter on browse page * fix search properties redirection to use propertyid not instanceid * fix admin ontologies visits sorting * fix ontologies browse page to show ontologies with no submissions * fix the sort by dates order in browse page * add apikey to the fairness cache key * show in the search box result "ontology view" for views * Feature: add a script to import or export CSV of the i18n locals (#597) * Fix: Remove duplicated ontology scheme rows (#584) * remove duplicated ontology scheme rows * move the concept details row duplication logic to filter_properties function * clean concept details component code * reject bottom set keys from leftover in concepts details component * fix skos-xl not been displayed in the raw data section * fix: summary page for ontologies with no submissions * Fix: Note thread show action (#606) * Fix undefined method error Resolves #308 * escape username when creating an ontology subscribtion * fix missing roots message for nil classes --------- Co-authored-by: Jennifer Vendetti <[email protected]> * Fix: user reset password internationalisation issue (#605) * fix user reset password internationalisation issue * get user info in reset password * fix card message component image * fix: trim the copied text in the clipboard stimulus controller (#611) * Feature: Add recommender system tests (#599) * install Webmock gem * setup recommender page test * mock recommender api results in recommender system test * add test edit text area and submit in recommender test * disable webmock after the test ends in recommender test * make add comment/proposal buttons smaller * remove non related code to recommender tests PR * put the a correct recommendations fixture * check the number of results in recommender test * check the number of the highlighted annotations in recommender test * Disable webmock before each test to insure the non mocking of the different requests * use dynamic host and apikey in recommender webmocking * Feature: add htaccess URIs redirection modal help (#580) * Add uri redirection for /ontologies/:acronym/:id to the appropriate page * small fixes: remove binding.pry and return resource_id in find_type_by_search * Add copy agroportal link functionality - this functionality is using the ClipboardComponent because it works the same but differ only in the content and icon - the clipboard component has been changed to accept title and icon * redirect to content finder page when no type is valid * Updated route to use redirect action instead of show_redirection * Use default icon and title arguments in the Clipboard Component * rename and internationalize clipboard component titles * small fix: remove % from svg icon * Add the copy title to the components section in en.yml and fr.yml * Show the generated uri when user hover over the copy link icon * Make the dynamic route content negotiable - based on the accept header we will - if "text/html" we will redirect to the agroportal page - else we will call the api and get the content serialized in the format specified and return it * update serialize content to return accept_header * translate copy_original_uri and copy_portal_uri to french * reuse search content concern in uri redirection concern * remove duplicate link_last_part method * Add htaccess functionality * Add apache and nginx instruction for htaccess redirection * Clean te code in the view file * Add OntologiesRedirectionController - remove redirect and generate_htaccess from ontologies_controller - clean code the generate_htaccess method - add "ontology_portal_uri" in @Identifiers * Regroupe routes * Make ontologies_redirection controller and refactor generate_htaccess code * Internationalization of redirection rewrite rules modal * Add note for url that has # * link contact support button to the feedback page * Change regex to redirect only url of type: /path/resource_id - for urls that has the # it will redirect to the ontology page * Add ontology redirection based on the accept header format * move the ontology redirection route to the bottom to have less priority * Change rewrite rules note using alert component * Add /ontologies/ACRONYM/download?format=FORMAT route * ontology redirection based on the accept header using /ontologies/acronym/download route * Add redirect assertion in ontologies controller test * Fix content serialization when calling /ontologies/:acronym/:id * create private function for accept header and remove ontology redirection * remove generate_rewrite_rules function * remove redirect assertion in ontologies controller test * change htaccess route to /ontologies/:acronym/htaccess * fix copy internal links in LinkFieldComponent * add raw to copy internal links in identifiers card * return all response and add text/n3 format in content serializer * escape id when redirecting to content_finder * choose the right result from the results of search content * add algorithm to choose the right accept header, not_acceptable if no format valid * add an additional security to the uri redirection to have an exact match * make the check resolvability icon clickable & redirect to the tool page * make the check resolvability extend to accept equivalent formats * move the redirection function from ontologies_controller to uri concern * fix check_resolvability_tool to redirect to the full url not only the path - the problem was because everytime it is redirecting to the uri.path and uri.path does not include the ?format parameter - add the octet-stream accept header in the accepted format for xml * add reference to the url of the original file when format not acceptable * put again the resolvability timeout to 5 secondes --------- Co-authored-by: Syphax bouazzouni <[email protected]> * Fix: Release 2.8.0 grouped issues - Summary, Concept, Notes, Mappings pages (#613) * fix hidden multiple synonyms in concept details * remove unecessary search icon from concepts, instances and schemes trees search inputs * fix the style of add comment and add proposal buttons * include page url auto in the errors page feedback form * add the selected bubble to the mappings legend tooltip * update the fix of hidden synonyms to prevent possible breaks * fix concept details raw data values alignement to use divs breaking line * fix recommender result ontology link to redirect to UI not API * fix summary ofaire tooltip breaking to a new line the card header * fix opening the concept tree view link in a new tab showing only html * fix french dates internationalization * fix edit submission up front help message in english version * handle the case of ontologies returning an error when roots are called * add no properties alert message to the ontology viewer * prevent ontology show redirection if summaryOnly show summary directly * localize the mappings vizualization legend text --------- Co-authored-by: Syphax Bouazzouni <[email protected]> * fix data tables warning issue (#624) --------- Co-authored-by: Bilel Kihal <[email protected]> Co-authored-by: Imad Bourouche <[email protected]> Co-authored-by: Jennifer Vendetti <[email protected]>
…nd Annotator issues(#632) * [ontoportal-bot] Gemfile.lock update * implement caching for the ofaire service * fix the browse page popularity sort --------- Co-authored-by: OntoPortal Bot <[email protected]>
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