exclude matcha and depedencies from build

README.md

@@ -5,9 +5,6 @@ Matcha-DL is an extension of the matching system Matcha to tackle semi-supervise
 
 ## Installation
 
-**Still under development** :
-The package is stil undergoing testing, we will have a distribution available on Pypi soon
-
 To install Matcha DL, you can use pip:
 ```bash
 pip install matcha-dl

matcha_dl/__init__.py

@@ -3,6 +3,38 @@
 import yaml
 from deeponto import init_jvm
 
+import tarfile
+import os
+import urllib.request
+
+MATCHA_DL_DIR = Path(__file__).parent
+
+print(MATCHA_DL_DIR)
+
+# If matchaJar and dependencies don't exist, download them.
+
+def download_macha():
+    url = "https://github.com/liseda-lab/Matcha-DL/releases/download/JARv0.1.0/matcha_jar.tar.gz"
+    download_path = MATCHA_DL_DIR / "impl/matcha/"
+    filename = download_path / "macha.tar.gz"
+
+    # Download the matcha directory
+    print("Downloading Matcha-DL jar and dependencies...")
+    urllib.request.urlretrieve(url, str(filename))
+
+    # Uncompress the tar.gz file
+    print("Uncompressing Matcha-DL jar and dependencies...")
+    with tarfile.open(str(filename), 'r:gz') as tar_ref:
+        tar_ref.extractall(download_path)
+
+    # Remove the tar.gz file
+    os.remove(str(filename))
+
+# Check if the matcha directory exists
+if not (MATCHA_DL_DIR / "impl/matcha/matcha/").exists():
+    print("Matcha-DL jar and dependencies not found. Downloading...")
+    download_macha()
+
 # Init JVM to skip prompt
 
 init_jvm("8G")

pyproject.toml

@@ -1,14 +1,15 @@
 [tool.poetry]
 name = "matcha-dl"
-version = "0.1.0"
+version = "0.1.1"
 description = "Matcha-DL is a tool for supervised ontology alignment. It takes as input two ontologies and a set of mappings between them, and learns a model that can predict mappings between the two ontologies."
 authors = ["Pedro Cotovio <[email protected]>"]
 readme = "README.md"
+repository = "https://github.com/liseda-lab/Matcha-DL"
 packages = [
     { include = "matcha_dl" },
 ]
 
-include = ["matcha_dl/**/*"]
+exclude = ["matcha_dl/impl/matcha/matcha/**/*"]
 
 [tool.poetry.dependencies]
 python = "^3.10"