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lisphilar committed Sep 4, 2022
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99 changes: 50 additions & 49 deletions docs/01_data_preparation.html
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<img src="https://raw.githubusercontent.com/lisphilar/covid19-sir/master/docs/logo/covsirphy_logo_100.png" class="logo" alt="Logo"/>
</a>
<div class="version">
2.26.0-eta
2.26.0
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
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<li class="toctree-l1"><a class="reference internal" href="03_ode.html">SIR-derived ODE models</a></li>
<li class="toctree-l1"><a class="reference internal" href="04_phase_dependent.html">Phase-dependent SIR models</a></li>
<li class="toctree-l1"><a class="reference internal" href="05_scenario_analysis.html">Scenario analysis</a></li>
<li class="toctree-l1"><a class="reference internal" href="06_prediction.html">ODE parameter prediction</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">API references</span></p>
<ul>
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</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
&#39;2.26.0-eta&#39;
&#39;2.26.0&#39;
</pre></div></div>
</div>
<div class="section" id="1.-Downloading-datasets-from-recommended-data">
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&lt;class &#39;pandas.core.frame.DataFrame&#39;&gt;
RangeIndex: 217532 entries, 0 to 217531
RangeIndex: 217670 entries, 0 to 217669
Data columns (total 33 columns):
# Column Non-Null Count Dtype
--- ------ -------------- -----
0 ISO3 217532 non-null category
1 Province 217532 non-null category
2 City 217532 non-null category
3 Date 217532 non-null datetime64[ns]
4 Cancel_events 171904 non-null object
5 Confirmed 197296 non-null object
6 Contact_tracing 171870 non-null object
7 Country 215113 non-null string
8 Fatal 180787 non-null object
9 Gatherings_restrictions 171916 non-null object
10 Information_campaigns 171910 non-null object
11 Internal_movement_restrictions 171945 non-null object
12 International_movement_restrictions 171968 non-null object
0 ISO3 217670 non-null category
1 Province 217670 non-null category
2 City 217670 non-null category
3 Date 217670 non-null datetime64[ns]
4 Cancel_events 171962 non-null object
5 Confirmed 197454 non-null object
6 Contact_tracing 171926 non-null object
7 Country 215274 non-null string
8 Fatal 180938 non-null object
9 Gatherings_restrictions 171974 non-null object
10 Information_campaigns 171966 non-null object
11 Internal_movement_restrictions 172003 non-null object
12 International_movement_restrictions 172026 non-null object
13 Mobility_grocery_and_pharmacy 113613 non-null object
14 Mobility_parks 113500 non-null object
15 Mobility_residential 113290 non-null object
16 Mobility_retail_and_recreation 113684 non-null object
17 Mobility_transit_stations 114594 non-null object
18 Mobility_workplaces 115023 non-null object
19 Population 214160 non-null object
19 Population 214318 non-null object
20 Product 114310 non-null string
21 Recovered 71473 non-null object
22 School_closing 171961 non-null object
23 Stay_home_restrictions 171925 non-null object
24 Stringency_index 171847 non-null object
25 Testing_policy 171898 non-null object
26 Tests 85296 non-null object
27 Transport_closing 171909 non-null object
21 Recovered 71479 non-null object
22 School_closing 172019 non-null object
23 Stay_home_restrictions 171983 non-null object
24 Stringency_index 171903 non-null object
25 Testing_policy 171954 non-null object
26 Tests 85305 non-null object
27 Transport_closing 171967 non-null object
28 Vaccinated_full 47179 non-null object
29 Vaccinated_once 49720 non-null object
30 Vaccinations 52377 non-null object
31 Vaccinations_boosters 25381 non-null object
32 Workplace_closing 171922 non-null object
32 Workplace_closing 171980 non-null object
dtypes: category(3), datetime64[ns](1), object(27), string(2)
memory usage: 50.6+ MB
memory usage: 50.7+ MB
</pre></div></div>
</div>
<p><code class="docutils literal notranslate"><span class="pre">DataEngineer.citations()</span></code> shows citations of the datasets.</p>
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&lt;class &#39;pandas.core.frame.DataFrame&#39;&gt;
RangeIndex: 217532 entries, 0 to 217531
RangeIndex: 217670 entries, 0 to 217669
Data columns (total 33 columns):
# Column Non-Null Count Dtype
--- ------ -------------- -----
0 ISO3 217532 non-null string
1 Province 217532 non-null string
2 City 217532 non-null string
3 Date 217532 non-null datetime64[ns]
4 Cancel_events 171904 non-null Float64
5 Confirmed 197296 non-null Float64
6 Contact_tracing 171870 non-null Float64
7 Country 215113 non-null string
8 Fatal 180787 non-null Float64
9 Gatherings_restrictions 171916 non-null Float64
10 Information_campaigns 171910 non-null Float64
11 Internal_movement_restrictions 171945 non-null Float64
12 International_movement_restrictions 171968 non-null Float64
0 ISO3 217670 non-null string
1 Province 217670 non-null string
2 City 217670 non-null string
3 Date 217670 non-null datetime64[ns]
4 Cancel_events 171962 non-null Float64
5 Confirmed 197454 non-null Float64
6 Contact_tracing 171926 non-null Float64
7 Country 215274 non-null string
8 Fatal 180938 non-null Float64
9 Gatherings_restrictions 171974 non-null Float64
10 Information_campaigns 171966 non-null Float64
11 Internal_movement_restrictions 172003 non-null Float64
12 International_movement_restrictions 172026 non-null Float64
13 Mobility_grocery_and_pharmacy 113613 non-null Float64
14 Mobility_parks 113500 non-null Float64
15 Mobility_residential 113290 non-null Float64
16 Mobility_retail_and_recreation 113684 non-null Float64
17 Mobility_transit_stations 114594 non-null Float64
18 Mobility_workplaces 115023 non-null Float64
19 Population 214160 non-null Float64
19 Population 214318 non-null Float64
20 Product 114310 non-null string
21 Recovered 71473 non-null Float64
22 School_closing 171961 non-null Float64
23 Stay_home_restrictions 171925 non-null Float64
24 Stringency_index 171847 non-null Float64
25 Testing_policy 171898 non-null Float64
26 Tests 85296 non-null Float64
27 Transport_closing 171909 non-null Float64
21 Recovered 71479 non-null Float64
22 School_closing 172019 non-null Float64
23 Stay_home_restrictions 171983 non-null Float64
24 Stringency_index 171903 non-null Float64
25 Testing_policy 171954 non-null Float64
26 Tests 85305 non-null Float64
27 Transport_closing 171967 non-null Float64
28 Vaccinated_full 47179 non-null Float64
29 Vaccinated_once 49720 non-null Float64
30 Vaccinations 52377 non-null Float64
31 Vaccinations_boosters 25381 non-null Float64
32 Workplace_closing 171922 non-null Float64
32 Workplace_closing 171980 non-null Float64
dtypes: Float64(27), datetime64[ns](1), string(5)
memory usage: 60.4 MB
</pre></div></div>
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