linting and completed imports

lldelisle · Jul 11, 2019 · 792b03c · 792b03c
1 parent cbb26a5
commit 792b03c
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Showing 5 changed files with 357 additions and 307 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: analysePeaks
 Title: Compare, annotate your peaks
-Version: 0.0.1
+Version: 0.0.2
 Authors@R: 
     person(given = "Lucille",
            family = "Lopez-Delisle",
@@ -13,6 +13,11 @@ Encoding: UTF-8
 LazyData: true
 RoxygenNote: 6.1.1
 Imports:
+    grDevices,
+    graphics,
+    utils,
+    usefulLDfunctions,
+    GenomicRanges,
     stats,
     pheatmap,
     reshape

diff --git a/NAMESPACE b/NAMESPACE
@@ -10,6 +10,19 @@ export(plotCateComparisonSetAndRef)
 export(plotClassicalHistogramForMyGRs)
 export(plotPairwiseComparison)
 import(stats)
+importFrom(GenomicRanges,distanceToNearest)
+importFrom(GenomicRanges,end)
+importFrom(GenomicRanges,findOverlaps)
+importFrom(GenomicRanges,flank)
 importFrom(GenomicRanges,mcols)
+importFrom(GenomicRanges,start)
+importFrom(grDevices,rainbow)
+importFrom(grDevices,rgb)
+importFrom(graphics,barplot)
+importFrom(graphics,hist)
+importFrom(graphics,legend)
+importFrom(graphics,par)
+importFrom(graphics,plot)
 importFrom(pheatmap,pheatmap)
 importFrom(reshape,cast)
+importFrom(utils,head)