ISPYB Docker

It sets up a ISPyB instance by using docker in Debian 8.

Steps are:

• Install debian packages
• Install JAVA
• Install Maven
• Download, install and configure JBOSS Wildfly 8.2
• Download ISPyB from github then build it
• Install MySQL DB and configure it passing newest scripts
• Ingest data from User portal. Not done yet automatically
• Ingest data for BioSAXS experiments
• Ingest data for MX experiments
• Ingest data for CryoEM experiments
• Install and configure EXI

Installation

It requires docker installed. Configure the proxies in DockerFile before building the container.

Building ISPyB

With no cache

docker build  -t dockcs.esrf.fr/dau/ispyb:1.0.0 --no-cache=true . 

With cache

docker build  -t dockcs.esrf.fr/dau/ispyb:1.0.0 . 

Running ISPyB

run.sh

or

docker run -p 8085:8080 -i -t dockcs.esrf.fr/dau/ispyb:1.0.0

Accesing to ISPyB UI

user: mx415 password: password

http://localhost:8085/ispyb

Accesing to DB

user: pxuser password: pxuser