Update time series links #1642
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Update time series links | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| name: | |
| description: 'Update time series data links' | |
| required: false | |
| schedule: | |
| - cron: "0 0 * * *" | |
| - cron: "0 17 * * *" | |
| jobs: | |
| update_time_series_links: | |
| runs-on: macOS-latest | |
| steps: | |
| - name: Checkout covidData repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("tidyverse", "dplyr", "httr", "readr", "here", "RSocrata")) | |
| shell: Rscript {0} | |
| - name: Update time series | |
| run: | | |
| library(httr) | |
| library(RSocrata) | |
| library(dplyr) | |
| library(here) | |
| setwd(here()) | |
| source("R/get_time_series_data_link.R") | |
| # get US data links | |
| jhu_us_deaths_data_links <- get_time_series_data_link(measure = "deaths", | |
| geography = "US", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_us_deaths_data_links, file = "data/jhu_us_deaths_data_links.csv", row.names = FALSE) | |
| jhu_us_cases_data_links <- get_time_series_data_link(measure = "cases", | |
| geography = "US", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_us_cases_data_links, file = "data/jhu_us_cases_data_links.csv", row.names = FALSE) | |
| # get global data links | |
| jhu_global_deaths_data_links <- get_time_series_data_link(measure = "deaths", | |
| geography = "global", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_global_deaths_data_links, file = "data/jhu_global_deaths_data_links.csv", row.names = FALSE) | |
| jhu_global_cases_data_links <- get_time_series_data_link(measure = "cases", | |
| geography = "global", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_global_cases_data_links, file = "data/jhu_global_cases_data_links.csv", row.names = FALSE) | |
| shell: Rscript {0} | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v7 | |
| with: | |
| add: '["data/jhu_us_cases_data_links.csv", "data/jhu_us_deaths_data_links.csv", "data/jhu_global_cases_data_links.csv", "data/jhu_global_deaths_data_links.csv"]' | |
| message: "Update time series data links" | |
| default_author: github_actions | |
| push: true |