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install fastqc
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lskatz committed Apr 22, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/unittests.yml
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Expand Up @@ -68,7 +68,7 @@ jobs:
shell: bash -el {0}
if: steps.cache-conda.outputs.cache-hit != 'true'
run: |
mamba install -y perl shovill krona samclip flash mash seqtk kmc lighter megahit pilon trimmomatic perl-bioperl kraken=1 spades skesa=2.4 python=3.7 perl-cg-pipeline perl-gd blast prodigal perl-app-cpanminus perl-statistics-descriptive perl-config-simple perl-file-slurp perl-moo perl-list-moreutils kma=1.4 multiqc
mamba install -y perl shovill krona samclip flash mash seqtk kmc lighter megahit pilon trimmomatic perl-bioperl kraken=1 spades skesa=2.4 python=3.7 perl-cg-pipeline perl-gd blast prodigal perl-app-cpanminus perl-statistics-descriptive perl-config-simple perl-file-slurp perl-moo perl-list-moreutils kma=1.4 multiqc fastqc
- name: check installation
shell: bash -el {0}
run: |
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