Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add command to create a collection of scores #15

Merged
merged 1 commit into from
Dec 2, 2023

Conversation

lukfor
Copy link
Owner

@lukfor lukfor commented Dec 2, 2023

This PR adds a command that merges multiple score files into one single sorted tab file.

@lukfor lukfor merged commit 117d6e1 into features/apply-collections Dec 2, 2023
1 check passed
@lukfor lukfor deleted the features/create-collection branch December 2, 2023 15:28
lukfor added a commit that referenced this pull request Dec 6, 2023
* Refactore apply task to use collection interface

* Support collection that contain mltiple scores

* Add command to create a collection of scores (#15)

* Fix issue with PGSIDs

* Refactor fileformat

* Add bgzip support to collections and info files

* Support tabix index for collections

* Register create-collection command

* Fix error in total variants calculation

* Add support of hm_inferOtherAllele column

* Improve collection and fix issue with duplicate positions

* Add score file option to create-collection command
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant