makie-fixes: Remove divergence at vpa=0 when plotting f/vpa^2 #1438
Workflow file for this run
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| # Based on example from https://github.com/julia-actions/julia-runtest | |
| name: Debug checks for correctness | |
| on: [push, pull_request] | |
| jobs: | |
| # The commented out job would run all debug checks, but they are slow so it | |
| # is better to run each type in a separate job so that the separate jobs can | |
| # run at the same time | |
| #debug-checks: | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # matrix: | |
| # # Only run on linux to save CI server cpu-hours | |
| # os: [ubuntu-latest] | |
| # fail-fast: false | |
| # timeout-minutes: 240 | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: mpi4py/setup-mpi@v1 | |
| # with: | |
| # mpi: 'openmpi' | |
| # - uses: actions/setup-python@v2 | |
| # - uses: julia-actions/setup-julia@v1 | |
| # with: | |
| # version: '1.8' | |
| # arch: x64 | |
| # - uses: julia-actions/julia-buildpkg@v1 | |
| # env: | |
| # # Use the system Python for PyCall - avoids library linking error on macOS | |
| # PYTHON: "${{ env.pythonLocation }}/bin/python" | |
| # name: Debug test | |
| # run: | | |
| # # Hard code the debug level so that we can run without using the | |
| # # `--compiled-modules=no` flag, which breaks Symbolics.jl at the | |
| # # moment. | |
| # sed -i -e "s/_debug_level = get_options.*/_debug_level = 2/" src/debugging.jl | |
| # pip3 install --user matplotlib | |
| # julia --project -e 'using MPIPreferences; MPIPreferences.use_system_binary()' | |
| # julia --project -e 'using Pkg; Pkg.build("MPI"; verbose=true)' | |
| # # Need to use openmpi so that the following arguments work: | |
| # # * `--mca rmaps_base_oversubscribe 1` allows oversubscription (more processes | |
| # # than physical cores). | |
| # # * `--mca mpi_yield_when_idle 1` changes a setting to prevent excessively | |
| # # terrible performance when oversubscribing. | |
| # ## Don't use --compiled-modules=no for now, as it currently breaks Symbolics.jl | |
| # #mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes --compiled-modules=no debug_test/runtests.jl --debug 3 | |
| # mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes debug_test/runtests.jl --debug 3 | |
| debug-checks-sound-wave: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Only run on linux to save CI server cpu-hours | |
| os: [ubuntu-latest] | |
| fail-fast: false | |
| timeout-minutes: 240 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - uses: actions/setup-python@v2 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1.8' | |
| arch: x64 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| env: | |
| # Use the system Python for PyCall - avoids library linking error on macOS | |
| PYTHON: "${{ env.pythonLocation }}/bin/python" | |
| - name: Debug test sound-wave | |
| run: | | |
| # Hard code the debug level so that we can run without using the | |
| # `--compiled-modules=no` flag, which breaks Symbolics.jl at the | |
| # moment. | |
| sed -i -e "s/_debug_level = get_options.*/_debug_level = 2/" src/debugging.jl | |
| pip3 install --user matplotlib | |
| julia --project -e 'using MPIPreferences; MPIPreferences.use_system_binary()' | |
| julia --project -e 'using Pkg; Pkg.build("MPI"; verbose=true)' | |
| # Need to use openmpi so that the following arguments work: | |
| # * `--mca rmaps_base_oversubscribe 1` allows oversubscription (more processes | |
| # than physical cores). | |
| # * `--mca mpi_yield_when_idle 1` changes a setting to prevent excessively | |
| # terrible performance when oversubscribing. | |
| ## Don't use --compiled-modules=no for now, as it currently breaks Symbolics.jl | |
| #mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes --compiled-modules=no debug_test/sound_wave_tests.jl --debug 2 | |
| mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes debug_test/sound_wave_tests.jl --debug 2 | |
| debug-checks-wall-bc: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Only run on linux to save CI server cpu-hours | |
| os: [ubuntu-latest] | |
| fail-fast: false | |
| timeout-minutes: 240 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - uses: actions/setup-python@v2 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1.8' | |
| arch: x64 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| env: | |
| # Use the system Python for PyCall - avoids library linking error on macOS | |
| PYTHON: "${{ env.pythonLocation }}/bin/python" | |
| - name: Debug test wall-bc | |
| run: | | |
| # Hard code the debug level so that we can run without using the | |
| # `--compiled-modules=no` flag, which breaks Symbolics.jl at the | |
| # moment. | |
| sed -i -e "s/_debug_level = get_options.*/_debug_level = 2/" src/debugging.jl | |
| pip3 install --user matplotlib | |
| julia --project -e 'using MPIPreferences; MPIPreferences.use_system_binary()' | |
| julia --project -e 'using Pkg; Pkg.build("MPI"; verbose=true)' | |
| # Need to use openmpi so that the following arguments work: | |
| # * `--mca rmaps_base_oversubscribe 1` allows oversubscription (more processes | |
| # than physical cores). | |
| # * `--mca mpi_yield_when_idle 1` changes a setting to prevent excessively | |
| # terrible performance when oversubscribing. | |
| ## Don't use --compiled-modules=no for now, as it currently breaks Symbolics.jl | |
| #mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes --compiled-modules=no debug_test/wall_bc_tests.jl --debug 2 | |
| mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes debug_test/wall_bc_tests.jl --debug 2 | |
| debug-checks-harrisonthompson: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Only run on linux to save CI server cpu-hours | |
| os: [ubuntu-latest] | |
| fail-fast: false | |
| timeout-minutes: 240 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - uses: actions/setup-python@v2 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1.8' | |
| arch: x64 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| env: | |
| # Use the system Python for PyCall - avoids library linking error on macOS | |
| PYTHON: "${{ env.pythonLocation }}/bin/python" | |
| - name: Debug test Harrison-Thompson | |
| run: | | |
| # Hard code the debug level so that we can run without using the | |
| # `--compiled-modules=no` flag, which breaks Symbolics.jl at the | |
| # moment. | |
| sed -i -e "s/_debug_level = get_options.*/_debug_level = 2/" src/debugging.jl | |
| pip3 install --user matplotlib | |
| julia --project -e 'using MPIPreferences; MPIPreferences.use_system_binary()' | |
| julia --project -e 'using Pkg; Pkg.build("MPI"; verbose=true)' | |
| # Need to use openmpi so that the following arguments work: | |
| # * `--mca rmaps_base_oversubscribe 1` allows oversubscription (more processes | |
| # than physical cores). | |
| # * `--mca mpi_yield_when_idle 1` changes a setting to prevent excessively | |
| # terrible performance when oversubscribing. | |
| ## Don't use --compiled-modules=no for now, as it currently breaks Symbolics.jl | |
| #mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes --compiled-modules=no debug_test/harrisonthompson.jl --debug 2 | |
| mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes debug_test/harrisonthompson.jl --debug 2 | |
| debug-checks-mms: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Only run on linux to save CI server cpu-hours | |
| os: [ubuntu-latest] | |
| fail-fast: false | |
| timeout-minutes: 240 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - uses: actions/setup-python@v2 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1.8' | |
| arch: x64 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| env: | |
| # Use the system Python for PyCall - avoids library linking error on macOS | |
| PYTHON: "${{ env.pythonLocation }}/bin/python" | |
| - name: Debug test MMS | |
| run: | | |
| # Hard code the debug level so that we can run without using the | |
| # `--compiled-modules=no` flag, which breaks Symbolics.jl at the | |
| # moment. | |
| sed -i -e "s/_debug_level = get_options.*/_debug_level = 2/" src/debugging.jl | |
| pip3 install --user matplotlib | |
| julia --project -e 'using MPIPreferences; MPIPreferences.use_system_binary()' | |
| julia --project -e 'using Pkg; Pkg.build("MPI"; verbose=true)' | |
| # Need to use openmpi so that the following arguments work: | |
| # * `--mca rmaps_base_oversubscribe 1` allows oversubscription (more processes | |
| # than physical cores). | |
| # * `--mca mpi_yield_when_idle 1` changes a setting to prevent excessively | |
| # terrible performance when oversubscribing. | |
| ## Don't use --compiled-modules=no for now, as it currently breaks Symbolics.jl | |
| #mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes --compiled-modules=no debug_test/mms_tests.jl --debug 2 | |
| mpiexec -np 4 --mca rmaps_base_oversubscribe 1 julia --project --check-bounds=yes debug_test/mms_tests.jl --debug 2 |