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Example input with 'time-evolving' electron shape function
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johnomotani committed Dec 7, 2024
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[r]
ngrid = 1
nelement = 1

[evolve_moments]
parallel_pressure = true
density = true
moments_conservation = true
parallel_flow = true

[reactions]
electron_ionization_frequency = 0.0
ionization_frequency = 0.5
charge_exchange_frequency = 0.75

[vz]
ngrid = 6
discretization = "gausslegendre_pseudospectral"
nelement = 31
L = 36.0
element_spacing_option = "coarse_tails"
bc = "zero"

[ion_species_1]
initial_temperature = 0.1
initial_density = 1.0

[krook_collisions]
use_krook = true

[vpa]
ngrid = 6
discretization = "gausslegendre_pseudospectral"
nelement = 31
L = 30.0
element_spacing_option = "coarse_tails"
bc = "zero"

[z]
ngrid = 5
discretization = "gausslegendre_pseudospectral"
nelement = 32
nelement_local = 4
bc = "wall"
element_spacing_option = "sqrt"

[vpa_IC_ion_species_1]
initialization_option = "gaussian"
density_amplitude = 1.0
temperature_amplitude = 0.0
density_phase = 0.0
upar_amplitude = 0.0
temperature_phase = 0.0
upar_phase = 0.0

[z_IC_neutral_species_1]
initialization_option = "gaussian"
temperature_amplitude = 0.0
density_amplitude = 0.001
density_phase = 0.0
upar_amplitude = -1.0
temperature_phase = 0.0
upar_phase = 0.0

[composition]
T_wall = 0.1
T_e = 0.2
electron_physics = "kinetic_electrons"
recycling_fraction = 0.5
n_ion_species = 1
n_neutral_species = 1

[vz_IC_neutral_species_1]
initialization_option = "gaussian"
density_amplitude = 1.0
temperature_amplitude = 0.0
density_phase = 0.0
upar_amplitude = 0.0
temperature_phase = 0.0
upar_phase = 0.0

[z_IC_ion_species_1]
initialization_option = "gaussian"
density_amplitude = 0.001
temperature_amplitude = 0.0
density_phase = 0.0
upar_amplitude = 1.0
temperature_phase = 0.0
upar_phase = 0.0

[neutral_species_1]
initial_temperature = 1.0
initial_density = 1.0

[timestepping]
type = "KennedyCarpenterARK324"
implicit_electron_advance = false
implicit_electron_time_evolving=true
implicit_electron_ppar = false
implicit_ion_advance = false
implicit_vpa_advection = false
nstep = 1000000
dt = 1.0e-5
nwrite = 1000
nwrite_dfns = 1000
steady_state_residual = true
converged_residual_value = 1.0e-3

#write_after_fixed_step_count = true
#nstep = 1
#nwrite = 1
#nwrite_dfns = 1

[electron_timestepping]
nstep = 5000000
#nstep = 1
dt = 1.0e-5
#maximum_dt = 1.0e-8
nwrite = 10000
nwrite_dfns = 100000
#type = "SSPRK4"
type = "Fekete4(3)"
rtol = 1.0e-3
atol = 1.0e-14
minimum_dt = 1.0e-9
decrease_dt_iteration_threshold = 100
increase_dt_iteration_threshold = 20
cap_factor_ion_dt = 10.0
initialization_residual_value = 2.5
converged_residual_value = 1.0e-2
include_wall_bc_in_preconditioner = true

#debug_io = 1

[nonlinear_solver]
nonlinear_max_iterations = 100
rtol = 1.0e-6 #1.0e-8
atol = 1.0e-14 #1.0e-16
linear_restart = 5
preconditioner_update_interval = 200

[ion_source_1]
active = true
z_profile = "gaussian"
z_width = 0.125
source_strength = 2.0
source_T = 2.0

[ion_numerical_dissipation]
#vpa_dissipation_coefficient = 1.0e-1
#vpa_dissipation_coefficient = 1.0e-2
#vpa_dissipation_coefficient = 1.0e-3
force_minimum_pdf_value = 0.0

[electron_numerical_dissipation]
vpa_dissipation_coefficient = 2.0
force_minimum_pdf_value = 0.0

[neutral_numerical_dissipation]
#vz_dissipation_coefficient = 1.0e-1
#vz_dissipation_coefficient = 1.0e-2
#vz_dissipation_coefficient = 1.0e-3
force_minimum_pdf_value = 0.0

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