Update kinetic electron examples are remove presumed outdated example…

…s using old boltzmann electron logical flag.

examples/kinetic-electrons/periodic_split3_boltzmann.toml

@@ -1,46 +1,8 @@
 #runtime_plots = true
-n_ion_species = 1
-n_neutral_species = 1
-electron_physics = "boltzmann_electron_response"
 evolve_moments_density = true
 evolve_moments_parallel_flow = true
 evolve_moments_parallel_pressure = true
 evolve_moments_conservation = true
-recycling_fraction = 0.5
-T_e = 1.0
-T_wall = 0.1
-initial_density1 = 1.0
-initial_temperature1 = 1.0
-z_IC_option1 = "sinusoid"
-z_IC_density_amplitude1 = 0.1
-z_IC_density_phase1 = 0.0
-z_IC_upar_amplitude1 = 1.0
-z_IC_upar_phase1 = 0.0
-z_IC_temperature_amplitude1 = 0.1
-z_IC_temperature_phase1 = 1.0
-vpa_IC_option1 = "gaussian"
-vpa_IC_density_amplitude1 = 1.0
-vpa_IC_density_phase1 = 0.0
-vpa_IC_upar_amplitude1 = 0.0
-vpa_IC_upar_phase1 = 0.0
-vpa_IC_temperature_amplitude1 = 0.0
-vpa_IC_temperature_phase1 = 0.0
-initial_density2 = 1.0
-initial_temperature2 = 1.0
-z_IC_option2 = "sinusoid"
-z_IC_density_amplitude2 = 0.001
-z_IC_density_phase2 = 0.0
-z_IC_upar_amplitude2 = 0.0
-z_IC_upar_phase2 = 0.0
-z_IC_temperature_amplitude2 = 0.0
-z_IC_temperature_phase2 = 0.0
-vpa_IC_option2 = "gaussian"
-vpa_IC_density_amplitude2 = 1.0
-vpa_IC_density_phase2 = 0.0
-vpa_IC_upar_amplitude2 = 0.0
-vpa_IC_upar_phase2 = 0.0
-vpa_IC_temperature_amplitude2 = 0.0
-vpa_IC_temperature_phase2 = 0.0
 charge_exchange_frequency = 0.75
 ionization_frequency = 0.0
 constant_ionization_rate = false
@@ -63,6 +25,58 @@ vz_L = 12.0
 vz_bc = "zero"
 vz_discretization = "chebyshev_pseudospectral"
 
+[composition]
+n_ion_species = 1
+n_neutral_species = 1
+electron_physics = "boltzmann_electron_response"
+recycling_fraction = 0.5
+T_e = 1.0
+T_wall = 0.1
+
+[ion_species_1]
+initial_density = 1.0
+initial_temperature = 1.0
+
+[z_IC_ion_species_1]
+initialization_option = "sinusoid"
+density_amplitude = 0.1
+density_phase = 0.0
+upar_amplitude = 1.0
+upar_phase = 0.0
+temperature_amplitude = 0.1
+temperature_phase = 1.0
+
+[vpa_IC_ion_species_1]
+initialization_option = "gaussian"
+density_amplitude = 1.0
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+temperature_amplitude = 0.0
+temperature_phase = 0.0
+
+[neutral_species_1]
+initial_density = 1.0
+initial_temperature = 1.0
+
+[z_IC_neutral_species_1]
+initialization_option = "sinusoid"
+density_amplitude = 0.001
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+temperature_amplitude = 0.0
+temperature_phase = 0.0
+
+[vpa_IC_neutral_species_1]
+initialization_option = "gaussian"
+density_amplitude = 1.0
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+temperature_amplitude = 0.0
+temperature_phase = 0.0
+
 [timestepping]
 type = "Fekete4(3)"
 nstep = 1000000

examples/kinetic-electrons/periodic_split3_braginskii-IMEX.toml

@@ -1,46 +1,8 @@
 #runtime_plots = true
-n_ion_species = 1
-n_neutral_species = 1
-electron_physics = "braginskii_fluid"
 evolve_moments_density = true
 evolve_moments_parallel_flow = true
 evolve_moments_parallel_pressure = true
 evolve_moments_conservation = true
-recycling_fraction = 0.5
-T_e = 1.0
-T_wall = 0.1
-initial_density1 = 1.0
-initial_temperature1 = 1.0
-z_IC_option1 = "sinusoid"
-z_IC_density_amplitude1 = 0.1
-z_IC_density_phase1 = 0.0
-z_IC_upar_amplitude1 = 1.0
-z_IC_upar_phase1 = 0.0
-z_IC_temperature_amplitude1 = 0.1
-z_IC_temperature_phase1 = 1.0
-vpa_IC_option1 = "gaussian"
-vpa_IC_density_amplitude1 = 1.0
-vpa_IC_density_phase1 = 0.0
-vpa_IC_upar_amplitude1 = 0.0
-vpa_IC_upar_phase1 = 0.0
-vpa_IC_temperature_amplitude1 = 0.0
-vpa_IC_temperature_phase1 = 0.0
-initial_density2 = 1.0
-initial_temperature2 = 1.0
-z_IC_option2 = "sinusoid"
-z_IC_density_amplitude2 = 0.001
-z_IC_density_phase2 = 0.0
-z_IC_upar_amplitude2 = 0.0
-z_IC_upar_phase2 = 0.0
-z_IC_temperature_amplitude2 = 0.0
-z_IC_temperature_phase2 = 0.0
-vpa_IC_option2 = "gaussian"
-vpa_IC_density_amplitude2 = 1.0
-vpa_IC_density_phase2 = 0.0
-vpa_IC_upar_amplitude2 = 0.0
-vpa_IC_upar_phase2 = 0.0
-vpa_IC_temperature_amplitude2 = 0.0
-vpa_IC_temperature_phase2 = 0.0
 charge_exchange_frequency = 0.75
 ionization_frequency = 0.0
 constant_ionization_rate = false
@@ -63,6 +25,56 @@ vz_L = 12.0
 vz_bc = "zero"
 vz_discretization = "chebyshev_pseudospectral"
 
+[composition]
+n_ion_species = 1
+n_neutral_species = 1
+electron_physics = "braginskii_fluid"
+recycling_fraction = 0.5
+T_e = 1.0
+T_wall = 0.1
+
+[ion_species_1]
+initial_density = 1.0
+initial_temperature = 1.0
+
+[z_IC_ion_species_1]
+initialization_option = "sinusoid"
+density_amplitude = 0.1
+density_phase = 0.0
+upar_amplitude = 1.0
+upar_phase = 0.0
+temperature_amplitude = 0.1
+temperature_phase = 1.0
+
+[vpa_IC_ion_species_1]
+initialization_option = "gaussian"
+density_amplitude = 1.0
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+temperature_amplitude = 0.0
+temperature_phase = 0.0
+
+[neutral_species_1]
+initial_density = 1.0
+initial_temperature = 1.0
+
+[z_IC_neutral_species_1]
+initialization_option = "sinusoid"
+density_amplitude = 0.001
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+temperature_amplitude = 0.0
+temperature_phase = 0.0
+
+[vpa_IC_neutral_species_1]
+initialization_option = "gaussian"
+density_amplitude = 1.0
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+
 [timestepping]
 type = "KennedyCarpenterARK324"
 implicit_ion_advance = false

examples/kinetic-electrons/periodic_split3_braginskii.toml

@@ -1,46 +1,8 @@
 #runtime_plots = true
-n_ion_species = 1
-n_neutral_species = 1
-electron_physics = "braginskii_fluid"
 evolve_moments_density = true
 evolve_moments_parallel_flow = true
 evolve_moments_parallel_pressure = true
 evolve_moments_conservation = true
-recycling_fraction = 0.5
-T_e = 1.0
-T_wall = 0.1
-initial_density1 = 1.0
-initial_temperature1 = 1.0
-z_IC_option1 = "sinusoid"
-z_IC_density_amplitude1 = 0.1
-z_IC_density_phase1 = 0.0
-z_IC_upar_amplitude1 = 1.0
-z_IC_upar_phase1 = 0.0
-z_IC_temperature_amplitude1 = 0.1
-z_IC_temperature_phase1 = 1.0
-vpa_IC_option1 = "gaussian"
-vpa_IC_density_amplitude1 = 1.0
-vpa_IC_density_phase1 = 0.0
-vpa_IC_upar_amplitude1 = 0.0
-vpa_IC_upar_phase1 = 0.0
-vpa_IC_temperature_amplitude1 = 0.0
-vpa_IC_temperature_phase1 = 0.0
-initial_density2 = 1.0
-initial_temperature2 = 1.0
-z_IC_option2 = "sinusoid"
-z_IC_density_amplitude2 = 0.001
-z_IC_density_phase2 = 0.0
-z_IC_upar_amplitude2 = 0.0
-z_IC_upar_phase2 = 0.0
-z_IC_temperature_amplitude2 = 0.0
-z_IC_temperature_phase2 = 0.0
-vpa_IC_option2 = "gaussian"
-vpa_IC_density_amplitude2 = 1.0
-vpa_IC_density_phase2 = 0.0
-vpa_IC_upar_amplitude2 = 0.0
-vpa_IC_upar_phase2 = 0.0
-vpa_IC_temperature_amplitude2 = 0.0
-vpa_IC_temperature_phase2 = 0.0
 charge_exchange_frequency = 0.75
 ionization_frequency = 0.0
 constant_ionization_rate = false
@@ -63,6 +25,56 @@ vz_L = 12.0
 vz_bc = "zero"
 vz_discretization = "chebyshev_pseudospectral"
 
+[composition]
+n_ion_species = 1
+n_neutral_species = 1
+electron_physics = "braginskii_fluid"
+recycling_fraction = 0.5
+T_e = 1.0
+T_wall = 0.1
+
+[ion_species_1]
+initial_density = 1.0
+initial_temperature = 1.0
+
+[z_IC_ion_species_1]
+initialization_option = "sinusoid"
+density_amplitude = 0.1
+density_phase = 0.0
+upar_amplitude = 1.0
+upar_phase = 0.0
+temperature_amplitude = 0.1
+temperature_phase = 1.0
+
+[vpa_IC_ion_species_1]
+initialization_option = "gaussian"
+density_amplitude = 1.0
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+temperature_amplitude = 0.0
+temperature_phase = 0.0
+
+[neutral_species_1]
+initial_density = 1.0
+initial_temperature = 1.0
+
+[z_IC_neutral_species_1]
+initialization_option = "sinusoid"
+density_amplitude = 0.001
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+temperature_amplitude = 0.0
+temperature_phase = 0.0
+
+[vpa_IC_neutral_species_1]
+initialization_option = "gaussian"
+density_amplitude = 1.0
+density_phase = 0.0
+upar_amplitude = 0.0
+upar_phase = 0.0
+
 [timestepping]
 type = "Fekete4(3)"
 nstep = 1000000