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Tidy up plots for Fokker Planck sheath experiments #235

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merged 3 commits into from
Sep 6, 2024
Merged

Tidy up plots for Fokker Planck sheath experiments #235

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fd79672
Tidy up plots.
Aug 7, 2024
3c076a8
Merge branch 'fokker-planck-vperp-bc-experiment' of https://github.co…
Aug 7, 2024
36fb60e
Merge branch 'master' into fokker-planck-vperp-bc-experiment
mrhardman Sep 5, 2024
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34 changes: 27 additions & 7 deletions plots_post_processing/plots_post_processing/src/plots_post_processing.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -3243,7 +3243,7 @@ function plot_fields_2D(phi, Ez, Er, time, z, r, iz0, ir0,
trygif(anim, outfile, fps=5)
elseif pp.animate_phi_vs_r_z && nr == 1 && nz > 1 # make a gif animation of ϕ(z) at different times
anim = @animate for i ∈ itime_min:nwrite_movie:itime_max
@views plot(z, phi[:,1,i], xlabel="z", ylabel=L"\widetilde{\phi}", ylims = (phimin,phimax))
@views plot(z, phi[:,1,i], xlabel="z", ylabel=L"\widetilde{\phi}", ylims = (phimin,phimax),label ="")
end
outfile = string(run_name, "_phi_vs_z.gif")
trygif(anim, outfile, fps=5)
Expand All @@ -3268,13 +3268,13 @@ function plot_fields_2D(phi, Ez, Er, time, z, r, iz0, ir0,
outfile = string(run_name, "_Ez"*description*"_vs_r_z.gif")
trygif(anim, outfile, fps=5)
anim = @animate for i ∈ itime_min:nwrite_movie:itime_max
@views plot(r, Ez[1,:,i], xlabel="r", ylabel=L"\widetilde{E}_z", ylims = (Ezmin,Ezmax))
@views plot(r, Ez[1,:,i], xlabel="r", ylabel=L"\widetilde{E}_z", ylims = (Ezmin,Ezmax), label="")
end
outfile = string(run_name, "_Ez(zwall-)_vs_r.gif")
trygif(anim, outfile, fps=5)
elseif pp.animate_Ez_vs_r_z && nr == 1 && nz > 1
anim = @animate for i ∈ itime_min:nwrite_movie:itime_max
@views plot(z, Ez[:,1,i], xlabel="z", ylabel=L"\widetilde{E}_z", ylims = (Ezmin,Ezmax))
@views plot(z, Ez[:,1,i], xlabel="z", ylabel=L"\widetilde{E}_z", ylims = (Ezmin,Ezmax), label="")
end
outfile = string(run_name, "_Ez_vs_z.gif")
trygif(anim, outfile, fps=5)
Expand All @@ -3291,7 +3291,7 @@ function plot_fields_2D(phi, Ez, Er, time, z, r, iz0, ir0,
outfile = string(run_name, "_Er"*description*"(r,z_wall-)_vs_r.pdf")
trysavefig(outfile)
anim = @animate for i ∈ itime_min:nwrite_movie:itime_max
@views plot(r, Er[1,:,i], xlabel="r", ylabel=L"\widetilde{E}_r", ylims = (Ermin,Ermax))
@views plot(r, Er[1,:,i], xlabel="r", ylabel=L"\widetilde{E}_r", ylims = (Ermin,Ermax), label="")
end
outfile = string(run_name, "_Er(zwall-)_vs_r.gif")
trygif(anim, outfile, fps=5)
Expand Down Expand Up @@ -3320,7 +3320,7 @@ function plot_ion_moments_2D(density, parallel_flow, parallel_pressure,
description = "_ion_spec"*string(is)*"_"
# the density
densitymin = minimum(density[:,:,is,:])
densitymax = maximum(density)
densitymax = maximum(density[:,:,is,:])
if pp.plot_density_vs_r0_z && nz > 1 # plot last timestep density[z,ir0]
@views plot(z, density[:,ir0,is,end], xlabel=L"z/L_z", ylabel=L"n_i")
outfile = string(run_name, "_density"*description*"(r0,z)_vs_z.pdf")
Expand All @@ -3338,7 +3338,13 @@ function plot_ion_moments_2D(density, parallel_flow, parallel_pressure,
end
outfile = string(run_name, "_density"*description*"_vs_r_z.gif")
trygif(anim, outfile, fps=5)
end
elseif pp.animate_density_vs_r_z && nr == 1 && nz > 1
anim = @animate for i ∈ itime_min:nwrite_movie:itime_max
@views plot(z, density[:,1,is,i], xlabel="z", ylabel=L"n_i", ylims = (densitymin,densitymax),label ="")
end
outfile = string(run_name, "_density"*description*"_vs_z.gif")
trygif(anim, outfile, fps=5)
end
if pp.plot_density_vs_r_z && nr > 1 && nz > 1
@views heatmap(r, z, density[:,:,is,end], xlabel=L"r", ylabel=L"z", c = :deep, interpolation = :cubic,
windowsize = (360,240), margin = 15pt)
Expand All @@ -3355,7 +3361,7 @@ function plot_ion_moments_2D(density, parallel_flow, parallel_pressure,
end
# the parallel flow
parallel_flowmin = minimum(parallel_flow[:,:,is,:])
parallel_flowmax = maximum(parallel_flow)
parallel_flowmax = maximum(parallel_flow[:,:,is,:])
if pp.plot_parallel_flow_vs_r0_z && nz > 1 # plot last timestep parallel_flow[z,ir0]
@views plot(z, parallel_flow[:,ir0,is,end], xlabel=L"z/L_z", ylabel=L"u_{i\|\|}")
outfile = string(run_name, "_parallel_flow"*description*"(r0,z)_vs_z.pdf")
Expand All @@ -3373,6 +3379,12 @@ function plot_ion_moments_2D(density, parallel_flow, parallel_pressure,
end
outfile = string(run_name, "_parallel_flow"*description*"_vs_r_z.gif")
trygif(anim, outfile, fps=5)
elseif pp.animate_parallel_flow_vs_r_z && nr == 1 && nz > 1
anim = @animate for i ∈ itime_min:nwrite_movie:itime_max
@views plot(z, parallel_flow[:,1,is,i], xlabel="z", ylabel=L"u_{i\|\|}", ylims = (parallel_flowmin,parallel_flowmax),label ="")
end
outfile = string(run_name, "_parallel_flow"*description*"_vs_z.gif")
trygif(anim, outfile, fps=5)
end
if pp.plot_parallel_flow_vs_r_z && nr > 1 && nz > 1
@views heatmap(r, z, parallel_flow[:,:,is,end], xlabel=L"r", ylabel=L"z", c = :deep, interpolation = :cubic,
Expand Down Expand Up @@ -3500,6 +3512,14 @@ function plot_ion_moments_2D(density, parallel_flow, parallel_pressure,
label = [L"p_{i\|\|}" L"p_{i\perp}" L"p_{i}"], foreground_color_legend = nothing, background_color_legend = nothing)
outfile = string(run_name, "_all_pressures"*description*"(r0,z)_vs_z.pdf")
trysavefig(outfile)
pmin = min(minimum(parallel_pressure[:,ir0,is,:]),minimum(perpendicular_pressure[:,ir0,is,:]),minimum(total_pressure[:,ir0,is,:]))
pmax = max(maximum(parallel_pressure[:,ir0,is,:]),maximum(perpendicular_pressure[:,ir0,is,:]),maximum(total_pressure[:,ir0,is,:]))
anim = @animate for i ∈ itime_min:nwrite_movie:itime_max
@views plot([z,z,z], [parallel_pressure[:,ir0,is,i],perpendicular_pressure[:,ir0,is,i],total_pressure[:,ir0,is,i]], xlabel=L"z/L_z", ylabel="",
label = [L"p_{i\|\|}" L"p_{i\perp}" L"p_{i}"], foreground_color_legend = nothing, background_color_legend = nothing, ylims = (pmin,pmax))
end
outfile = string(run_name, "_all_pressures"*description*"(r0,z)_vs_z.gif")
trygif(anim, outfile, fps=5)
end
# the thermal speed
if pp.plot_vth0_vs_t
Expand Down
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