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Ion braginskii fluid#263

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LucasMontoya4 wants to merge 26 commits intomastermabarnes/moment_kinetics:masterfrom ion_braginskii_fluidmabarnes/moment_kinetics:ion_braginskii_fluidCopy head branch name to clipboard

+962-365

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Commits on Sep 18, 2024

• Update naming of update_qpar for ions to be update_ion_qpar, in line with update_neutral_qz

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• Add ion_physics flag to determine drift_kinetic, gyrokinetic or braginskii ion physics. Gyrokinetic flag replacement of the gyrokinetic_ions case will happen in a later commit, so right now the gyr…

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• Update gyrokinetic flag uses throughout the repo, so that instead of gyrokinetic_ions = true being the test, we see whether ion_physics == gyrokinetic_ions

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Commits on Sep 19, 2024

• Some of the Braginskii functionality (unfinished)

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• Merge branch 'master' into ion_flags

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• Merge branch 'ion_flags' into ion_braginskii_fluid

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• Make initialisation for braginskii ion heat flux be calculated from unnormalised pdf (then subsequent heat flux updates will be with the braginskii closure)

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• Merge branch 'master' into ion_braginskii_fluid

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Commits on Sep 20, 2024

• Add braginskii heat flux formula by adding an ion dT_dz component in the struct, as well as an ion temp

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• add loop to allow n_neutral_species = 0 and CFL plots to still be made for ions

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• Merge branch 'master' into ion_braginskii_fluid

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• Move order of krook_collisions.jl inclusion to allow velocity_moments.jl to use the reference collision frequency to calculate braginskii heat flux

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Commits on Sep 21, 2024

• Add plotting for collisionality (comparing gradient scale lengths to mean free path) and braginskii heat flux boundary condition at walls, following Stangeby (though I haven't checked the subtracte…

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Commits on Sep 23, 2024

• Add comparison plots functionality for collisionality_plots, and add small correction to ion braginskii heat flux boundary condition

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• Add comments to boundary condition of braginskii heat flux, and add docstring for collisionality_plots function in makie_post_processing

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• Fix bug during restarts to allow for multiple sources while external_source_controller_integral is still unused

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• Make collisionality_plots plot the last timestep value (which was originally hard coded)

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• Merge branch 'master' into ion_braginskii_fluid

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Commits on Sep 26, 2024

• Merge branch 'master' into ion_braginskii_fluid

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Commits on Sep 27, 2024

• Add option of overlaying what the Braginskii heat flux would be for that run (for when heat flux in the simulation is calculated using the shape function - having this option for braginskii_ions wo…

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• Add option for super Gaussian with decay of 4th power instead of second power in upstream external source. Might add higher powers later.

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• Merge branch 'master' into ion_braginskii_fluid

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Commits on Sep 28, 2024

• Fix typo when energy source used

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Commits on Sep 30, 2024

• Don't plot braginskii overlay if the original simulation itself was a braginskii one (which just overplots the old one, apart from the boundaries)

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Commits on Oct 1, 2024

• Add string to braginskii_overlay system to tell you its an overlay, which is much clearer than just writing braginskii everywhere. Note that I will soon change the naming system to collisional_krook

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• Merge branch 'ion_braginskii_fluid' of github.com:mabarnes/moment_kinetics into ion_braginskii_fluid

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