Dependencies
PAML
Raxml
pal2nal
prank
rpy2
R
this is the stuff for running paml
python /share/OrthoFinder/orthofinder.py -f genomes/ -t 60
bash sco.sh
bash sco2cds.sh
bash autoPAML.sh -t 45
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This is code for running Orthofinder -> PAML
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macmanes-lab/PAML
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This is code for running Orthofinder -> PAML
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