MedImageOCR

Optical Character Recognition for Medical Images.

ocr.py

Uses Google's Tesseract engine for OCR.

Installation

• OpenCV ** pip install opencv-contrib-python for full install or pip install opencv-python for partial
• pytesseract ** pip install pytesseract

ocr_easy.py

Build image

docker build -t ocr:latest .

Build without a cache

docker build --no-cache -t ocr:latest .

Run

docker run --rm -v /Volumes/AMBRA_Backup/ERICH-GENE/All_Data___De_Identified/02-21-394359/CT_2_16_840_1_114444_637165914114654373_2063130837_20200123:/data ocr:latest /data/CT_20200123.zip

Run interactively

docker run --rm -v /Volumes/AMBRA_Backup/ERICH-GENE/All_Data___De_Identified/02-21-394359/CT_2_16_840_1_114444_637165914114654373_2063130837_20200123:/data --env "PYTHONUNBUFFERED=1" -it --entrypoint /bin/bash ocr:latest

Run with GPU

docker run --rm --gpus all -v /Volumes/AMBRA_Backup/ERICH-GENE/All_Data___De_Identified/02-21-394359/CT_2_16_840_1_114444_637165914114654373_2063130837_20200123:/data ocr:latest /data/CT_20200123.zip