v0.3.8

-filter alignments by mapping quality

v0.3.7

-adjust index generation behaviour for bwa-mem

v0.3.6

• fix coverage computations edge case
• fix sequence search in genome

v0.3.5

binary dependencies are taken from jll artifacts and do not have to be installed separately anymore for:

• samtools
• bwa-mem2
• fastp
• minimap2

v0.3.4

• Only allow UInt64 as type for read ids in Sequences and AlignedReads.
• fix usage of type LongDNA
• fix alternative alignments handling in AlignedReads
• fix FeatureCounts error handling
• improve efficiency of AlignedReads and maxdiffsignal and Logo

v0.3.3

fix automatic IGR completion for start and end of chromosomes

v0.3.2

improve efficiency of Genome

v0.3.1

no allocations for annotating alignments + speedup

v0.3.0

fix version