mastodon-deep-lineage-0.4.7

What's Changed

• Allow Umap with 1 target dimension by @stefanhahmann in #130

Full Changelog: mastodon-deep-lineage-0.4.6...mastodon-deep-lineage-0.4.7

mastodon-deep-lineage-0.4.5

• Remove length unit from BranchTimepointFeature

Full Changelog: mastodon-deep-lineage-0.4.4...mastodon-deep-lineage-0.4.5

mastodon-deep-lineage-0.4.4

What's Changed

• Add new feature BranchTimepoints by @stefanhahmann in #128
  • Allows computing of the first and the last timepoint of a branch using the feature computer. Useful for time based analysis using the branch grapher

Full Changelog: mastodon-deep-lineage-0.4.3...mastodon-deep-lineage-0.4.4

mastodon-deep-lineage-0.4.3

What's Changed

• Bugfix in import spots from label image in the case of 2D+t images: 4b80969

Full Changelog: mastodon-deep-lineage-0.4.2...mastodon-deep-lineage-0.4.3

mastodon-deep-lineage-0.4.2

What's Changed

• Bugfix in dendrogram view of lineage clustering by @stefanhahmann in #127

Full Changelog: mastodon-deep-lineage-0.4.1...mastodon-deep-lineage-0.4.2

mastodon-deep-lineage-0.4.1

What's Changed

• Prepare code to add new dimensionality reduction methods. Already added option t-sne had to be deactivated, since the library used for computation causes class path conflict with Fiji. An alternative library could not yet be added, since it requires Fiji to be run with JDK21 @stefanhahmann in #120, #125 and #126
• Switch to newly released mastodon core version 1.0.0-beta-33 by @stefanhahmann in #124

Full Changelog: mastodon-deep-lineage-0.3.4...mastodon-deep-lineage-0.4.1

mastodon-deep-lineage-0.3.4

What's Changed

• Enable Import of Spots from segmented Image data for 2D images by @stefanhahmann in #121

Full Changelog: mastodon-deep-lineage-0.3.2...mastodon-deep-lineage-0.3.4

mastodon-deep-lineage-0.3.3

Build against Mastodon core beta-32 release and with pom-scijava 39.0.0

Full Changelog: mastodon-deep-lineage-0.3.2...mastodon-deep-lineage-0.3.3

mastodon-deep-lineage-0.3.2

This release has been built against the API of Mastodon-Beta-31.

• Changed the menu location of the export, import, feature computation and lineage clustering function
• Fixed a small bug that occurred in the dialog of the cluster lineages command by making the external projects file list non persistent

Full Changelog: mastodon-deep-lineage-0.3.0...mastodon-deep-lineage-0.3.2

mastodon-deep-lineage-0.3.0

What's Changed

• Add possibility to perform dimensionality reduction using Umap algorithm by @stefanhahmann in #113
  • This can be tested using https://github.com/mastodon-sc/mastodon-example-data/tree/master/tgmm-mini
  • 
• Hierarchical clustering of lineage trees using multiple similar projects by @stefanhahmann in #107
  • This can be tested using https://github.com/mastodon-sc/mastodon-example-data/tree/master/astec
• Export result of hierarchical clustering of lineage trees to CSV by @stefanhahmann in #112
  • 
• Select resolution level in export ellipsoid to label image by @stefanhahmann in #106
• Rename function lineage classification to hierarchical clustering of lineage trees by @stefanhahmann in #115
• Update pom-scijava to version 38.0.1 by @stefanhahmann in #108

Full Changelog: mastodon-deep-lineage-0.2.1...mastodon-deep-lineage-0.3.0