This repository is a Cookiecutter project template for creating new bioinformatics based projects
- Python 3.6 or higher
- Cookiecutter
After generating your new project, navigate to the project directory and follow the instructions in the generated README.md file to set up and start working on your project.
Here is an example of how to generate a new project:
cookiecutter https://github.com/mattmuller0/cookiecutter-bioinformaticsYou will be prompted to enter various details such as the project name, author name, and other configuration options. Once you provide the inputs, Cookiecutter will create a new project directory with the specified name and populate it with the template files.
.
├── LICENSE <- The license for the project
├── README.md <- The top-level README for developers using this project.
├── config <- Configuration files, e.g., for doxygen or for your model if needed
├── docs <- Documentation, e.g., doxygen, scientific papers, etc.
├── data
│ ├── processed <- The final, canonical processed data
│ └── raw <- The original, immutable data dump.
├── workflows <- Workflow scripts, e.g., for nextflow or slurm
├── notebooks <- Jupyter notebooks or Rmarkdown files for exploratory analysis
├── code <- Code for use in this project.
├── writing <- Manuscripts preparation
├── output
│ └── experiment <- output from experiments
│ └── ...