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cave updates
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Chrats-Melkonian committed Oct 12, 2024
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10 changes: 9 additions & 1 deletion docs/data-processing/cave-expedition.md
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!!! important "Learning objectives"
- Explore binning results from biofilm metagenomes in a greenhouse gas-emitting cave
- Explore binning results from biofilm metagenomes in a greenhouse gas-emitting cave.
- Seek evidence identifying the primary consumers (CO2 & CH4) within this extreme environment.

![Cave Microbiome Sampling](../assets/cave1-1.png)
(a) General overview of the cave. (b) Detailed images of the cave biofilms. The dashed line in panel a marks the stable gaseous chemocline between the volcanic gases (below the chemocline) and atmospheric air (above the chemocline). (c) A closer look on the biofilm where mark 7 shows the bare cave wall after biofilm sampling.

Data are precomputed and store at folder /data/precomputed/cave_data containing:
- co-assembly (3 samples; 2 from biofilm and 1 from the laboratory)
- Depth table
- Binning results
3 changes: 2 additions & 1 deletion docs/data-processing/intro.md
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- Can you find out how the microbial community adapts?

## Slides
[:fontawesome-solid-file-pdf: Download the presentation](../assets/from_zero_to_hero.pdf){: .md-button }
[:fontawesome-solid-file-pdf: Download the presentation (2022)](../assets/from_zero_to_hero.pdf){: .md-button }
[:fontawesome-solid-file-pdf: Download the presentation (2024)](../assets/from_zero_to_hero.pdf){: .md-button }

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