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netbofia committed Dec 14, 2016
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Expand Up @@ -10,18 +10,18 @@ The Breeding API specifies a standard interface for plant phenotype/genotype dat
Call | Description
------------ | -------------
[Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication/Authentication.md) | This resource refers to the authentication mechanism for the API.
Calls](https://github.com/plantbreeding/API/blob/master/Specification/ | N.A.
Crops](https://github.com/plantbreeding/API/blob/master/Specification/ | For multi crop systems this is a useful call to list all the supported crops.
GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/ | Retrieving genetic or physical maps
Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/ | N.A.
GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/ | N.A.
Locations](https://github.com/plantbreeding/API/blob/master/Specification/ | Location calls.
MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/ | For the purposes of this API, the definition of markerprofile is *the allele calls for a specified germplasm line, for all markers, for a specified set of genotyping experiments or all experiments.*
Markers](https://github.com/plantbreeding/API/blob/master/Specification/ | N.A.
ObservationVariables | Observation variable data response
Phenotypes](https://github.com/plantbreeding/API/blob/master/Specification/ | API to retrieve data (phenotype, environment variables) from studies. While the study calls focus on one study, calls in this section are for cross-study phenotypic data retrieval.
Programs](https://github.com/plantbreeding/API/blob/master/Specification/ | N.A.
Samples](https://github.com/plantbreeding/API/blob/master/Specification/ | API methods for traking/managing plant samples and realted metatdata. Sample in the context of these BrAPI calls, is defined as the actual bilogical plant material collected from the field.
Studies](https://github.com/plantbreeding/API/blob/master/Specification/ | Study is defined as a phenotyping experiment conducted at a single geographic location. One Trial can have multiple studies conducted (e.g. multi location international trials).
Traits](https://github.com/plantbreeding/API/blob/master/Specification/ | Services related to trials. Trials comprise of multiple studies.
Trials](https://github.com/plantbreeding/API/blob/master/Specification/ | Services related to trials. Trials comprise of multiple studies.
[Calls](https://github.com/plantbreeding/API/blob/master/Specification/Calls/Calls.md) | N.A.
[Crops](https://github.com/plantbreeding/API/blob/master/Specification/Crops/Crops.md) | For multi crop systems this is a useful call to list all the supported crops.
[GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/GenomeMaps.md) | Retrieving genetic or physical maps
[Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/Germplasm.md) | N.A.
[GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes/GermplasmAttributes.md) | N.A.
[Locations](https://github.com/plantbreeding/API/blob/master/Specification/Locations/Locations.md) | Location calls.
[MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfiles.md) | For the purposes of this API, the definition of markerprofile is *the allele calls for a specified germplasm line, for all markers, for a specified set of genotyping experiments or all experiments.*
[Markers](https://github.com/plantbreeding/API/blob/master/Specification/Markers/Markers.md) | N.A.
[ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/ObservationVariables.md) | Observation variable data response
[Phenotypes](https://github.com/plantbreeding/API/blob/master/Specification/Phenotypes/Phenotypes.md) | API to retrieve data (phenotype, environment variables) from studies. While the study calls focus on one study, calls in this section are for cross-study phenotypic data retrieval.
[Programs](https://github.com/plantbreeding/API/blob/master/Specification/Programs/Programs.md) | N.A.
[Samples](https://github.com/plantbreeding/API/blob/master/Specification/Samples/Samples.md) | API methods for traking/managing plant samples and realted metatdata. Sample in the context of these BrAPI calls, is defined as the actual bilogical plant material collected from the field.
[Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies/Studies.md) | Study is defined as a phenotyping experiment conducted at a single geographic location. One Trial can have multiple studies conducted (e.g. multi location international trials).
[Traits](https://github.com/plantbreeding/API/blob/master/Specification/Traits/Traits.md) | Services related to trials. Trials comprise of multiple studies.
[Trials](https://github.com/plantbreeding/API/blob/master/Specification/Trials/Trials.md) | Services related to trials. Trials comprise of multiple studies.

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