Test Pull Requests #1050
pbelmannworkflow_modules.yml
on: workflow_dispatch
settings
1m 45s
cplex_docker
34s
full_pipeline
8h 8m
full_pipeline_ont
11h 0m
qc
1h 44m
external_SRA
2h 2m
mag_attributes
3h 53m
dereplication
10m 5s
quickstart
4h 40m
gettingStarted
1h 0m
readmapping
3m 11s
assembly
3h 15m
cooccurrence
1h 4m
fragment_recruitment
5s
annotation
43m 31s
annotation_database_tests_part_1
3h 32m
annotation_database_tests_part_2
3h 8m
external_S3_annotation_database
5s
external_gtdb_S3_mag_attributes
19s
metabolomics
5s
plasmid
6s
Annotations
13 errors and 1 warning
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cplex_docker
Process completed with exit code 1.
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gettingStarted
Process completed with exit code 1.
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external_gtdb_S3_mag_attributes
File was unable to be removed Error: EACCES: permission denied, unlink '/vol/spool/actions-runner1/_work/metagenomics-tk/metagenomics-tk/databases/checkm2/md5sum.txt'
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external_S3_annotation_database
File was unable to be removed Error: EACCES: permission denied, unlink '/vol/spool/actions-runner1/_work/metagenomics-tk/metagenomics-tk/databases/checkm2/lock.txt'
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fragment_recruitment
File was unable to be removed Error: EACCES: permission denied, unlink '/vol/spool/actions-runner1/_work/metagenomics-tk/metagenomics-tk/databases/gtdb/lock.txt'
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metabolomics
File was unable to be removed Error: EACCES: permission denied, unlink '/vol/spool/actions-runner1/_work/metagenomics-tk/metagenomics-tk/databases/checkm2/lock.txt'
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plasmid
File was unable to be removed Error: EACCES: permission denied, unlink '/vol/spool/actions-runner1/_work/metagenomics-tk/metagenomics-tk/databases/gtdb/lock.txt'
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annotation_database_tests_part_1
The run was canceled by @pbelmann.
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annotation_database_tests_part_1
An error occurred trying to start process '/vol/spool/actions-runner3/externals/node20/bin/node' with working directory '/vol/spool/actions-runner3/_work/metagenomics-tk/metagenomics-tk'. No such file or directory
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annotation_database_tests_part_1
The operation was canceled.
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annotation_database_tests_part_2
The run was canceled by @pbelmann.
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annotation_database_tests_part_2
An error occurred trying to start process '/vol/spool/actions-runner2/externals/node20/bin/node' with working directory '/vol/spool/actions-runner2/_work/metagenomics-tk/metagenomics-tk'. No such file or directory
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annotation_database_tests_part_2
The operation was canceled.
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external_gtdb_S3_mag_attributes
Unable to clean or reset the repository. The repository will be recreated instead.
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