Skip to content

Actions: metagenomics/metagenomics-tk

Actions

Close artifacts of closed Pull Requests

Actions

Loading...
Loading

Show workflow options

Create status badge

Loading
cleanup.yml
24 workflow runs
24 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Create LICENSE Close artifacts of closed Pull Requests #159: Pull request #367 closed by pbelmann
October 15, 2024 13:35 13s feat/license
feat/license
October 15, 2024 13:35 13s
fix(annotation): mmseqs taxonomy should consider container ram limit Close artifacts of closed Pull Requests #158: Pull request #366 closed by pbelmann
October 15, 2024 13:18 15s fix/mmseqs-taxonomy-ram-limit
fix/mmseqs-taxonomy-ram-limit
October 15, 2024 13:18 15s
fix(config): consider partial genes in mmseqs Close artifacts of closed Pull Requests #157: Pull request #365 closed by pbelmann
October 9, 2024 19:22 16s fix/consider-partial-genes
fix/consider-partial-genes
October 9, 2024 19:22 16s
fix(magAttribute): checkm2 should use scratch directory if possible Close artifacts of closed Pull Requests #156: Pull request #362 closed by pbelmann
July 19, 2024 09:12 17s fix/checkm2-temp
fix/checkm2-temp
July 19, 2024 09:12 17s
feat(qc): add filter for human DNA Close artifacts of closed Pull Requests #155: Pull request #360 closed by pbelmann
July 12, 2024 05:51 14s feature/clean-human
feature/clean-human
July 12, 2024 05:51 14s
Fix ont coverm Close artifacts of closed Pull Requests #154: Pull request #361 closed by pbelmann
July 4, 2024 15:22 15s fix/ont-coverm
fix/ont-coverm
July 4, 2024 15:22 15s
feat(aggregation): add rpkm and tpm matrix Close artifacts of closed Pull Requests #153: Pull request #359 closed by pbelmann
May 27, 2024 14:44 25s feature/add-tpm-rpkm-matrix
feature/add-tpm-rpkm-matrix
May 27, 2024 14:44 25s
fix(magAttributes): replace wget with newer static binary Close artifacts of closed Pull Requests #152: Pull request #358 closed by pbelmann
May 24, 2024 08:42 1m 56s fix/download-issues
fix/download-issues
May 24, 2024 08:42 1m 56s
Fix/gtdb Close artifacts of closed Pull Requests #151: Pull request #357 closed by pbelmann
May 13, 2024 21:00 16s fix/gtdb
fix/gtdb
May 13, 2024 21:00 16s
feat(tests): production tests now also include an emgb import Close artifacts of closed Pull Requests #150: Pull request #354 closed by pbelmann
April 4, 2024 12:28 14s feature/production-tests-with-emgb
feature/production-tests-with-emgb
April 4, 2024 12:28 14s
fix(annotation): do not wait for unclassified gtdb results for prokka input Close artifacts of closed Pull Requests #149: Pull request #352 closed by pbelmann
March 19, 2024 12:56 23s fix/improve-annotation-sclaling
fix/improve-annotation-sclaling
March 19, 2024 12:56 23s
Feature/mmseqs speedup Close artifacts of closed Pull Requests #148: Pull request #348 closed by pbelmann
March 4, 2024 21:37 19s feature/mmseqs-speedup
feature/mmseqs-speedup
March 4, 2024 21:37 19s
feat(metabolomics): carveme independent of cplex Close artifacts of closed Pull Requests #147: Pull request #351 closed by pbelmann
March 4, 2024 09:20 13s feature/carveme-without-cplex
feature/carveme-without-cplex
March 4, 2024 09:20 13s
feat(magAttributes): use chunk index instead of random id Close artifacts of closed Pull Requests #146: Pull request #349 closed by pbelmann
February 25, 2024 08:51 12s feat/remove-random
feat/remove-random
February 25, 2024 08:51 12s
fix(assembler): do not skip flavor Close artifacts of closed Pull Requests #145: Pull request #350 closed by pbelmann
February 22, 2024 17:51 19s fix/ram-selection
fix/ram-selection
February 22, 2024 17:51 19s
Feature/checkm2 Close artifacts of closed Pull Requests #144: Pull request #346 closed by pbelmann
February 7, 2024 12:52 8h 43m 55s feature/checkm2
feature/checkm2
February 7, 2024 12:52 8h 43m 55s
feat(pipeline): initial implementation for easy/preset pipeline execution mode added Close artifacts of closed Pull Requests #143: Pull request #345 closed by pbelmann
February 3, 2024 10:18 23s feature/usage
feature/usage
February 3, 2024 10:18 23s
Fix/emgb export Close artifacts of closed Pull Requests #142: Pull request #347 closed by pbelmann
January 30, 2024 08:13 24s fix/emgb_export
fix/emgb_export
January 30, 2024 08:13 24s
fix(configuration): create db directory only if db parameter provided Close artifacts of closed Pull Requests #141: Pull request #344 closed by pbelmann
January 28, 2024 15:47 17h 4m 45s fix/create-db-directory
fix/create-db-directory
January 28, 2024 15:47 17h 4m 45s
Feature/nf secrets Close artifacts of closed Pull Requests #140: Pull request #343 closed by pbelmann
January 22, 2024 21:45 52s feature/nf-secrets
feature/nf-secrets
January 22, 2024 21:45 52s
Fix/speedup databases Close artifacts of closed Pull Requests #139: Pull request #332 closed by pbelmann
October 25, 2023 20:27 20s fix/speedup-databases
fix/speedup-databases
October 25, 2023 20:27 20s
fix(cplex): use quay.io image Close artifacts of closed Pull Requests #138: Pull request #342 closed by pbelmann
October 25, 2023 11:01 23s fix/cplex-base-on-quay-io
fix/cplex-base-on-quay-io
October 25, 2023 11:01 23s
fix(annotation): reduce sensitivity when running tests Close artifacts of closed Pull Requests #137: Pull request #341 closed by pbelmann
October 17, 2023 09:44 20s fix/speedup-ci-db-tests
fix/speedup-ci-db-tests
October 17, 2023 09:44 20s
feat(emgb): add tests to ensure that the export does not break Close artifacts of closed Pull Requests #136: Pull request #339 closed by pbelmann
October 16, 2023 19:05 21s feat/emgb-tests
feat/emgb-tests
October 16, 2023 19:05 21s