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feature(clowm): point try-it-out parameters to test data in repository
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,22 +1,23 @@ | ||
| { | ||
| "inputParameters": ["input.paired.path"], | ||
| "outputParameters": ["output"], | ||
| "resourceParameters": [ | ||
| "steps.magAttributes.gtdb.database.extractedDBPath", | ||
| "steps.magAttributes.checkm.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.kegg.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.vfdb.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.bacmet20_experimental.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.bacmet20_predicted.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.uniref90.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2_taxonomy.gtdb.database.extractedDBPath", | ||
| "steps.annotation.rgi.database.extractedDBPath", | ||
| "steps.annotation.keggFromMMseqs2.database.extractedDBPath", | ||
| "steps.plasmid.ViralVerifyPlasmid.database.extractedDBPath", | ||
| "steps.plasmid.PLSDB.database.extractedDBPath", | ||
| "steps.magAttributes.checkm2.database.extractedDBPath" | ||
| ], | ||
| "exampleParameters": { | ||
| "input.paired.path": "https://openstack.cebitec.uni-bielefeld.de:8080/meta_test/test_data/fullPipeline/reads_split.tsv" | ||
| } | ||
| "inputParameters": ["input.paired.path"], | ||
| "outputParameters": ["output"], | ||
| "resourceParameters": [ | ||
| "steps.magAttributes.gtdb.database.extractedDBPath", | ||
| "steps.magAttributes.checkm.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.kegg.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.vfdb.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.bacmet20_experimental.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.bacmet20_predicted.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2.uniref90.database.extractedDBPath", | ||
| "steps.annotation.mmseqs2_taxonomy.gtdb.database.extractedDBPath", | ||
| "steps.annotation.rgi.database.extractedDBPath", | ||
| "steps.annotation.keggFromMMseqs2.database.extractedDBPath", | ||
| "steps.plasmid.ViralVerifyPlasmid.database.extractedDBPath", | ||
| "steps.plasmid.PLSDB.database.extractedDBPath", | ||
| "steps.magAttributes.checkm2.database.extractedDBPath" | ||
| ], | ||
| "exampleParameters": { | ||
| "input.paired.path": "${projectDir}/test_data/fullPipeline/reads_split.tsv", | ||
| "input.ont.path": "${projectDir}/test_data/fullPipeline/ont.tsv" | ||
| } | ||
| } |