class changes

meyer-lab · Jan 25, 2024 · 33da12c · 33da12c
1 parent ae33bcd
commit 33da12c
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/ddmc/clustering.py b/ddmc/clustering.py
@@ -44,13 +44,17 @@ def __init__(
 
         seqs = sequences.str.upper().to_list()
 
+
+
+    def gen_peptide_distances(self, seqs, distance_method):
         if distance_method == "PAM250":
             self.seq_dist: PAM250 | Binomial = PAM250(seqs)
         elif distance_method == "Binomial":
             self.seq_dist = Binomial(sequences, seqs)
         else:
             raise ValueError("Wrong distance type.")
 
+
     def _estimate_log_prob(self, X: np.ndarray):
         """Estimate the log-probability of each point in each cluster."""
         logp = super()._estimate_log_prob(X)  # Do the regular work