Spatial query for spatial transcriptomics data

Clustering scRNAseq by genotypes

MEA-NAP. A streamlined diagnostic and analytic tool for data obtained using microelectrode arrays.

Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3

Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3

Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.

Single Cell Consensus Clustering with Speed

The Julia Programming Language

Transposition event detection tool using NGS alignment data and SV calling outputs (VCF files) from PBSV or Sniffles

Transposon annotation tool "resonaTE" (part of TransposonUltimate)

Transposon classification tools RFSB, part of TransposonUltimate

A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easier for people to install and run these softwares.

TransposonUltimate - a holistic set of tools for transposon identification