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  • Brigham and Women's Hospital
  • Boston
  • X @m_hemberg

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Spatial query for spatial transcriptomics data

Python 3 1 Updated Oct 12, 2024
Jupyter Notebook 17 6 Updated Feb 20, 2025

Clustering scRNAseq by genotypes

Python 175 47 Updated Nov 15, 2024

MEA-NAP. A streamlined diagnostic and analytic tool for data obtained using microelectrode arrays.

Jupyter Notebook 17 7 Updated Feb 28, 2025

Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3

C++ 39 7 Updated Mar 4, 2024

Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3

C++ 1 Updated Aug 4, 2022

Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.

Python 7 6 Updated Dec 11, 2024

Single Cell Consensus Clustering with Speed

Python 20 6 Updated Dec 12, 2022

The Julia Programming Language

Julia 46,499 5,545 Updated Mar 1, 2025

Transposition event detection tool using NGS alignment data and SV calling outputs (VCF files) from PBSV or Sniffles

Python 7 Updated Mar 4, 2022

Transposon annotation tool "resonaTE" (part of TransposonUltimate)

Python 16 1 Updated Mar 4, 2022

Transposon classification tools RFSB, part of TransposonUltimate

Python 13 4 Updated Mar 27, 2024

A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easier for people to install and run these softwares.

Perl 13 6 Updated Mar 4, 2022

TransposonUltimate - a holistic set of tools for transposon identification

84 5 Updated Mar 4, 2022
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