Skip to content
@microbial-pangenomes-lab

Microbial Pangenomes Lab

Pinned Loading

  1. microGWAS microGWAS Public template

    Bacterial GWAS analysis

    Python 32 1

  2. plate_reader_evolution plate_reader_evolution Public

    Evolution experiments in microplate formats

    Python

  3. panfeed panfeed Public

    A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.

    Python 8

  4. 2022_sarscov2_epistasis 2022_sarscov2_epistasis Public

    Estimating epistatic interactions from SARS-CoV-2 genomes

    Jupyter Notebook 1 1

  5. 2021_ecoli_pathogenicity 2021_ecoli_pathogenicity Public

    Bacterial GWAS for E. coli BSI genetic determinants

    Jupyter Notebook 1 1

Repositories

Showing 10 of 16 repositories
  • microGWAS Public template

    Bacterial GWAS analysis

    microbial-pangenomes-lab/microGWAS’s past year of commit activity
    Python 32 MIT 1 4 0 Updated Nov 27, 2024
  • microbial-pangenomes-lab.github.io Public
    microbial-pangenomes-lab/microbial-pangenomes-lab.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Nov 20, 2024
  • panfeed Public

    A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.

    microbial-pangenomes-lab/panfeed’s past year of commit activity
    Python 8 Apache-2.0 0 0 0 Updated Nov 19, 2024
  • bacterial_transcription Public
    microbial-pangenomes-lab/bacterial_transcription’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 12, 2024
  • 2024_aso_evolution Public

    Analysis script for the laboratory evolution experiments with ASOs

    microbial-pangenomes-lab/2024_aso_evolution’s past year of commit activity
    GDScript 0 MIT 0 0 0 Updated Oct 28, 2024
  • 2022_sarscov2_epistasis Public

    Estimating epistatic interactions from SARS-CoV-2 genomes

    microbial-pangenomes-lab/2022_sarscov2_epistasis’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Jul 12, 2024
  • plate_reader_evolution Public

    Evolution experiments in microplate formats

    microbial-pangenomes-lab/plate_reader_evolution’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 1, 2024
  • ChiBio Public Forked from HarrisonSteel/ChiBio

    ChiBio primary operating system.

    microbial-pangenomes-lab/ChiBio’s past year of commit activity
    Python 0 30 0 0 Updated May 31, 2024
  • 2023_ecoli_protection Public
    microbial-pangenomes-lab/2023_ecoli_protection’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 13, 2024
  • panaroo Public Forked from gtonkinhill/panaroo

    An updated pipeline for pangenome investigation

    microbial-pangenomes-lab/panaroo’s past year of commit activity
    Python 0 MIT 34 0 0 Updated Dec 7, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…