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AUC chart #2171
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AUC chart #2171
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// Copyright (c) Microsoft Corporation. | ||
// Licensed under the MIT License. | ||
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export interface IAUCData { | ||
AUCData: number[][]; | ||
selectedLabels: string[]; | ||
} |
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// Copyright (c) Microsoft Corporation. | ||
// Licensed under the MIT License. | ||
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import { binarizeData, calculatePerClassROCData } from "./calculateAUCData"; | ||
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describe("Test binarizeData", () => { | ||
it("should binarize numbers", () => { | ||
const result = binarizeData([1, 3, 4, 0], [0, 1, 2, 3, 4]); | ||
expect(result).toEqual([ | ||
[0, 1, 0, 0, 0], | ||
[0, 0, 0, 1, 0], | ||
[0, 0, 0, 0, 1], | ||
[1, 0, 0, 0, 0] | ||
]); | ||
}); | ||
it("should binarize strings", () => { | ||
const result = binarizeData( | ||
["one", "two", "three"], | ||
["three", "one", "two"] | ||
); | ||
expect(result).toEqual([ | ||
[0, 1, 0], | ||
[0, 0, 1], | ||
[1, 0, 0] | ||
]); | ||
}); | ||
it("should binarize binary data", () => { | ||
const result = binarizeData([1, 0, 1, 0], [0, 1]); | ||
expect(result).toEqual([ | ||
[0, 1], | ||
[1, 0], | ||
[0, 1], | ||
[1, 0] | ||
]); | ||
}); | ||
}); | ||
describe("Test calculatePerClassROCData", () => { | ||
it("generate x,y data corresponding to fpr and tpr respectively", () => { | ||
const result = calculatePerClassROCData( | ||
[0.33, 0.32, 0.34, 0.29, 0.12, 0.41, 0.4, 0.39], | ||
[0, 1, 1, 0, 1, 0, 0, 0] | ||
); | ||
expect(result).toEqual({ | ||
points: [ | ||
{ | ||
x: 1, | ||
y: 1 | ||
}, | ||
{ | ||
x: 1, | ||
y: 0.6666666666666666 | ||
}, | ||
{ | ||
x: 0.8, | ||
y: 0.6666666666666666 | ||
}, | ||
{ | ||
x: 0.8, | ||
y: 0.3333333333333333 | ||
}, | ||
{ | ||
x: 0.6, | ||
y: 0.3333333333333333 | ||
}, | ||
{ | ||
x: 0.6, | ||
y: 0 | ||
}, | ||
{ | ||
x: 0.4, | ||
y: 0 | ||
}, | ||
{ | ||
x: 0.2, | ||
y: 0 | ||
}, | ||
{ | ||
x: 0, | ||
y: 0 | ||
}, | ||
{ | ||
x: 0, | ||
y: 0 | ||
} | ||
] | ||
}); | ||
}); | ||
}); |
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// Copyright (c) Microsoft Corporation. | ||
// Licensed under the MIT License. | ||
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||
import { localization } from "@responsible-ai/localization"; | ||
import { SeriesOptionsType } from "highcharts"; | ||
import { orderBy, sum, unzip, zipWith } from "lodash"; | ||
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import { IDataset } from "../Interfaces/IDataset"; | ||
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interface IPoint { | ||
x: number; | ||
y: number; | ||
} | ||
export interface IROCData { | ||
points: IPoint[]; | ||
} | ||
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function getStaticROCData(): SeriesOptionsType[] { | ||
return [ | ||
{ | ||
data: [ | ||
{ x: 0, y: 0 }, | ||
{ x: 0, y: 1 }, | ||
{ x: 1, y: 1 } | ||
], | ||
name: localization.Interpret.Charts.Ideal, | ||
type: "line" | ||
}, | ||
{ | ||
data: [ | ||
{ x: 0, y: 0 }, | ||
{ x: 1, y: 1 } | ||
], | ||
name: localization.Interpret.Charts.Random, | ||
type: "line" | ||
} | ||
]; | ||
} | ||
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export function getConvexHullPoints(points: IPoint[]): IPoint[] { | ||
// construct the convex hull of the ROC points | ||
const sortedPoints = orderBy(points, ["x", "y"], ["asc", "desc"]); | ||
const convexHullPoints = []; | ||
let highestY = -Infinity; | ||
for (let i = 0; i < sortedPoints.length; i++) { | ||
// only add points which have a greater y value than the last seen y | ||
if (sortedPoints[i].y >= highestY) { | ||
convexHullPoints.push(sortedPoints[i]); | ||
highestY = sortedPoints[i].y; | ||
} | ||
let frontIterator = i + 1; | ||
while ( | ||
frontIterator < sortedPoints.length && | ||
sortedPoints[i].x === sortedPoints[frontIterator].x | ||
) { | ||
frontIterator++; | ||
} | ||
i = frontIterator; | ||
} | ||
return convexHullPoints; | ||
} | ||
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export function calculatePerClassROCData( | ||
probabilityY: number[], | ||
binY: number[] | ||
): IROCData { | ||
const yData = zipWith(probabilityY, binY, (p: number, y: number) => { | ||
return { | ||
binaryY: y, | ||
probability: p | ||
}; | ||
}); | ||
const sortedYData = orderBy(yData, ["probability"], ["asc"]); | ||
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const points: IPoint[] = []; | ||
let truePositives = sum(binY); | ||
let falsePositives = binY.length - truePositives; | ||
let trueNegatives = 0; | ||
let falseNegatives = 0; | ||
addROCPoint( | ||
truePositives, | ||
falsePositives, | ||
trueNegatives, | ||
falseNegatives, | ||
points | ||
); | ||
for (const y of sortedYData) { | ||
if (y.binaryY) { | ||
falseNegatives++; | ||
truePositives--; | ||
} else { | ||
trueNegatives++; | ||
falsePositives--; | ||
} | ||
addROCPoint( | ||
truePositives, | ||
falsePositives, | ||
trueNegatives, | ||
falseNegatives, | ||
points | ||
); | ||
} | ||
points.push({ x: 0, y: 0 }); | ||
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const rocData: IROCData = { | ||
points: getConvexHullPoints(points) | ||
}; | ||
return rocData; | ||
} | ||
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function addROCPoint( | ||
truePositives: number, | ||
falsePositives: number, | ||
trueNegatives: number, | ||
falseNegatives: number, | ||
points: IPoint[] | ||
): void { | ||
// prevent division by 0 | ||
const totalNegatives = trueNegatives + falsePositives; | ||
const totalPositives = truePositives + falseNegatives; | ||
const tpr = totalPositives === 0 ? 1 : truePositives / totalPositives; | ||
const fpr = totalNegatives === 0 ? 1 : falsePositives / totalNegatives; | ||
points.push({ x: fpr, y: tpr }); | ||
} | ||
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export function binarizeData( | ||
yData: string[] | number[] | number[][], | ||
classes: string[] | number[] | ||
): number[][] { | ||
// binarize labels in a one-vs-all fashion | ||
const yBinData: number[][] = []; | ||
for (const yDatum of yData) { | ||
const binaryData = classes.map((c) => { | ||
return c === yDatum ? 1 : 0; | ||
}); | ||
yBinData.push(binaryData); | ||
} | ||
return yBinData; | ||
} | ||
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// based on https://msdata.visualstudio.com/Vienna/_git/AzureMlCli?path=/src/azureml-metrics/azureml/metrics/_classification.py&version=GBmaster | ||
export function calculateAUCData(dataset: IDataset): SeriesOptionsType[] { | ||
if (!dataset.probability_y || !dataset.class_names) { | ||
// TODO: show warning message ? | ||
return [...getStaticROCData()]; | ||
} | ||
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// TODO: for some reason in the adult census data, classnames doesn't match the true_y data | ||
// need to confirm how this data aligns. temporarily hard code classnames to 0 and 1 for now | ||
const cNames = [0, 1]; | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. This should only run for binary classification, right? So we probably need a check somewhere to disable the component otherwise. For multiclass one could do one vs all but I don't know if anyone wants that. There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. in the studio, there's an auc chart for multiclass so i assumed we'd want that (binarizeData is supposed to handle this case), but i'll discuss with Minsoo tomorrow There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. That's probably 1 vs all, so that makes sense. |
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const binTrueY = binarizeData(dataset.true_y, cNames); | ||
// transpose in order to group class data together | ||
const perClassBinY = unzip(binTrueY); | ||
const perClassProba = unzip(dataset.probability_y); | ||
const data = []; | ||
// loop through each class to calculate roc data per class | ||
for (const [i, element] of perClassBinY.entries()) { | ||
const classROCData = calculatePerClassROCData(perClassProba[i], element); | ||
const classData = { | ||
data: classROCData.points, | ||
name: dataset.class_names ? dataset.class_names[i] : "", | ||
type: "line" | ||
}; | ||
data.push(classData); | ||
} | ||
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const allData = [...data, ...getStaticROCData()]; | ||
return allData as SeriesOptionsType[]; | ||
} |
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@@ -838,7 +838,9 @@ | |
"rowIndex": "Row index", | ||
"absoluteIndex": "Absolute index", | ||
"xValue": "X-value", | ||
"yValue": "Y-value" | ||
"yValue": "Y-value", | ||
"Ideal": "Ideal", | ||
"Random": "Random" | ||
}, | ||
"Cohort": { | ||
"_cohort.comment": "a subset of the data is called a cohort", | ||
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@@ -1804,6 +1806,11 @@ | |
"micro": "Micro" | ||
}, | ||
"classSelectionDropdown": "Select class(es)", | ||
"AUCChart": { | ||
"title": "AUC", | ||
"falsePositiveRate": "False positive rate", | ||
"truePositiveRate": "True positive rate" | ||
}, | ||
"iouThresholdDropdown": { | ||
"name": "IoU Threshold", | ||
"description": "Intersection over Union quantifies the degree of overlap between the prediction and ground truth bounding box of a detected object in an image. For example, setting an IoU threshold of 70% means that a prediction with greater than 70% overlap with ground truth is True, thus influencing the definition of prediction correctness and calculation of other performance metrics.", | ||
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@@ -1828,6 +1835,7 @@ | |
"regressionDistributionPivotItem": "Target distribution", | ||
"metricsVisualizationsPivotItem": "Metrics visualizations", | ||
"confusionMatrixPivotItem": "Confusion matrix", | ||
"AUCPivotItem": "AUC Chart", | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. This is fine, but we'll probably need a little explainer somewhere. Especially because it's an acronym There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. will discuss with Minsoo! |
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"disaggregatedAnalysisFeatureSelectionPlaceholder": "Select features to generate the feature-based analysis.", | ||
"tableCountTooltip": "Cohort {0} contains {1} instances.", | ||
"tableMetricTooltip": "The model's {0} on cohort {1} is {2}", | ||
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// Copyright (c) Microsoft Corporation. | ||
// Licensed under the MIT License. | ||
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import { Stack, StackItem, getTheme } from "@fluentui/react"; | ||
import { | ||
BasicHighChart, | ||
IDataset, | ||
ILabeledStatistic, | ||
ITelemetryEvent, | ||
ModelAssessmentContext, | ||
calculateAUCData, | ||
defaultModelAssessmentContext | ||
} from "@responsible-ai/core-ui"; | ||
import React from "react"; | ||
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import { getAUCChartOptions } from "./getAUCChartOptions"; | ||
import { modelOverviewChartStyles } from "./ModelOverviewChart.styles"; | ||
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interface IAUCChartProps { | ||
dataset: IDataset; | ||
cohortStats: ILabeledStatistic[][]; | ||
telemetryHook?: (message: ITelemetryEvent) => void; | ||
} | ||
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export class AUCChart extends React.PureComponent<IAUCChartProps> { | ||
public static contextType = ModelAssessmentContext; | ||
public context: React.ContextType<typeof ModelAssessmentContext> = | ||
defaultModelAssessmentContext; | ||
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public render(): React.ReactNode { | ||
const theme = getTheme(); | ||
const classNames = modelOverviewChartStyles(); | ||
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if ( | ||
this.context.dataset.predicted_y === undefined || | ||
this.context.dataset.true_y === undefined | ||
) { | ||
return React.Fragment; | ||
} | ||
const yLength = this.context.dataset.predicted_y.length; | ||
if (this.context.dataset.true_y.length !== yLength) { | ||
return React.Fragment; | ||
} | ||
const allData = calculateAUCData(this.props.dataset); | ||
const plotData = getAUCChartOptions(allData, theme); | ||
return ( | ||
<Stack id="modelOverviewAUCChart"> | ||
<StackItem className={classNames.chart}> | ||
<BasicHighChart | ||
configOverride={plotData} | ||
theme={theme} | ||
id="AUCChart" | ||
/> | ||
</StackItem> | ||
</Stack> | ||
); | ||
} | ||
} |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
If you add zeros after the comma to get all the points closer together (0.032, 0.033, 0.034, for example), then it will not do it right, will it?