Rename to miniBUDE and add preferred citation

milthorpe · Apr 22, 2021 · 99362eb · 99362eb
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diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
-# BUDE Benchmark
+# miniBUDE
 
-This repository contains implementation of the core computation of the Bristol University Docking Engine (BUDE) in different HPC programming models.
+This mini-app is an implementation of the core computation of the Bristol University Docking Engine (BUDE) in different HPC programming models.
 The benchmark is a virtual screening run of the NDM-1 protein and runs the energy evaluation for a single generation of poses repeatedly, for a configurable number of iterations.
 Increasing the iteration count has similar performance effects to docking multiple ligands back-to-back in a production BUDE docking run.
 
@@ -43,3 +43,9 @@ Two input decks are included in this repository:
 They are located in the [`data`](data/) directory, and `bm1` is run by default.
 All implementations accept a `--deck` parameter to specify an input deck directory.
 See [`makedeck`](makedeck/) for how to generate additional input decks.
+
+## Citing
+
+Please cite miniBUDE using the following reference:
+
+> Andrei Poenaru, Wei-Chen Lin and Simon McIntosh-Smith. ‘A Performance Analysis of Modern Parallel Programming Models Using a Compute-Bound Application’. In: 36th International Conference, ISC High Performance 2021. Frankfurt, Germany, 2021. In press.
diff --git a/cuda/README.md b/cuda/README.md
@@ -1,6 +1,6 @@
-# BUDE CUDA
+# miniBUDE CUDA
 
-This is a GPU implementation of BUDE using CUDA.
+This is a GPU implementation of miniBUDE using CUDA.
 
 ## Building
 

diff --git a/data/README.md b/data/README.md
@@ -1,4 +1,4 @@
-# BUDE Benchmark Data
+# miniBUDE Benchmark Data
 
 This directory contains input data and reference output.
 Each sub-directory is a self-contained test case.

diff --git a/kokkos/README.md b/kokkos/README.md
@@ -1,6 +1,6 @@
-# BUDE Kokkos
+# miniBUDE Kokkos
 
-This is an implementation of BUDE using Kokkos.
+This is an implementation of miniBUDE using Kokkos.
 
 ## Building
 

diff --git a/makedeck/README.md b/makedeck/README.md
@@ -1,6 +1,6 @@
-# BUDE makedeck
+# miniBUDE makedeck
 
-This program generates input decks for the BUDE benchmark from a set of mol2 and bhff files.
+This program generates input decks for miniBUDE from a set of mol2 and bhff files.
 
 ## Building
 
@@ -55,7 +55,7 @@ params.txt # contains original program arguments used to generate this deck
 ref_energies.out # contains reference energies used for verification
 ```
 
-The input deck directory can then be specified in all BUDE implementations:
+The input deck directory can then be specified in all miniBUDE implementations:
 
     ./bude --deck output
 

diff --git a/openacc/README.md b/openacc/README.md
@@ -1,6 +1,6 @@
-# BUDE OpenACC
+# miniBUDE OpenACC
 
-This is a GPU implementation of BUDE using OpenACC.
+This is a GPU implementation of miniBUDE using OpenACC.
 
 ## Building
 

diff --git a/opencl/README.md b/opencl/README.md
@@ -1,6 +1,6 @@
-# BUDE OpenCL
+# miniBUDE OpenCL
 
-This is a GPU implementation of BUDE using OpenCL.
+This is a GPU implementation of miniBUDE using OpenCL.
 
 ## Building
 

diff --git a/openmp-target/README.md b/openmp-target/README.md
@@ -1,6 +1,6 @@
-# BUDE OpenMP Target
+# miniBUDE OpenMP Target
 
-This is a GPU implementation of BUDE using OpenMP target.
+This is a GPU implementation of miniBUDE using OpenMP target.
 
 ## Building
 

diff --git a/openmp/README.md b/openmp/README.md
@@ -1,6 +1,6 @@
-# BUDE OpenMP
+# miniBUDE OpenMP
 
-This is a CPU implementation of BUDE using OpenMP 3.
+This is a CPU implementation of miniBUDE using OpenMP 3.
 
 ## Building
 

diff --git a/sycl/README.md b/sycl/README.md
@@ -1,6 +1,6 @@
-# BUDE SYCL
+# miniBUDE SYCL
 
-This is a CPU implementation of BUDE using SYCL.
+This is a CPU implementation of miniBUDE using SYCL.
 
 ## Building