updated version number to 0.9.2

mkborregaard · Nov 13, 2014 · 0029ef0 · 0029ef0
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: nodiv
 Type: Package
 Title: Compares the distribution of sister clades through a phylogeny
-Version: 0.9.1
-Date: 2014-11-09
+Version: 0.9.2
+Date: 2014-11-13
 Author: Michael Krabbe Borregaard
 Maintainer: Michael Krabbe Borregaard <[email protected]>
 Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution). DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.

diff --git a/man/nodiv-package.Rd b/man/nodiv-package.Rd
@@ -12,8 +12,8 @@ The package implements Borregaard et al. (2014) method for identifying nodes in
 \tabular{ll}{
 Package: \tab nodiv\cr
 Type: \tab Package\cr
-Version: \tab 0.9.1\cr
-Date: \tab 2014-11-09\cr
+Version: \tab 0.9.2\cr
+Date: \tab 2014-11-13\cr
 License: \tab GPL-2\cr
 }
 The workflow starts by creating a \code{nodiv_data} data object, which makes sure that the phylogeny, the species distributions and the spatial coordinates of sites are matched correctly. The function takes a number of data types. There are several functions for exploratory data analysis, including \code{plot}, \code{summary}, \code{richness}, \code{Node_occupancy}, \code{Node_size} etc. The core of the package are the functions \code{Nodesig}, which compares the distributions of the two clades descending from a node, and \code{Node_analysis}, which applies this function to all nodes in the phylogeny and summarizes the results as a \code{nodiv_result} object. There is a set of functions for interpretation of the results, including \code{plot}, \code{plotSOS}, and \code{summary}. The package also provides basic functions for plotting and manipulating data sets that combine spatial distributions with phylogenies, e.g. \code{subsample}, \code{plot_grid} and \code{plot_points}.