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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,92 +1,92 @@ | ||
| version: 2.1 | ||
| jobs: | ||
| r-release: | ||
| docker: | ||
| - image: rocker/verse | ||
| steps: | ||
| - checkout | ||
| # version: 2.1 | ||
| # jobs: | ||
| # r-release: | ||
| # docker: | ||
| # - image: rocker/verse | ||
| # steps: | ||
| # - checkout | ||
|
|
||
| # create a unique env var for the cache. Unfortunately normal env vars | ||
| # are not picked up by the cache, therefore this workaround is needed. | ||
| # See https://discuss.circleci.com/t/cannot-use-circle-yml-environment-variables-in-cache-keys/10994/7 | ||
| - run: echo "$(date '+%d-%m')-r-release" > /tmp/_tmp_file | ||
| - restore_cache: | ||
| key: R-package-library-{{ checksum "/tmp/_tmp_file" }} | ||
| # # create a unique env var for the cache. Unfortunately normal env vars | ||
| # # are not picked up by the cache, therefore this workaround is needed. | ||
| # # See https://discuss.circleci.com/t/cannot-use-circle-yml-environment-variables-in-cache-keys/10994/7 | ||
| # - run: echo "$(date '+%d-%m')-r-release" > /tmp/_tmp_file | ||
| # - restore_cache: | ||
| # key: R-package-library-{{ checksum "/tmp/_tmp_file" }} | ||
|
|
||
| # install deps and check pkg --------------------------------------------- | ||
| - run: | ||
| name: "[r-release] Install dependencies" | ||
| command: | | ||
| sudo apt update && sudo apt install -y pandoc | ||
| R -q -e "install.packages('pak', repos = 'https://r-lib.github.io/p/pak/devel')" | ||
| R -q -e "if (grepl('Ubuntu', Sys.info()[['version']])) {options(repos = c(CRAN = sprintf('https://packagemanager.rstudio.com/all/__linux__/%s/latest', system('lsb_release -cs', intern = TRUE))))}; pak::local_install_dev_deps()" | ||
| # R -q -e "pak::pkg_install(c('alan-turing-institute/distr6', 'xoopR/param6', 'mlr-org/mlr3proba'))" | ||
| R -q -e "pak::local_install()" | ||
| # # install deps and check pkg --------------------------------------------- | ||
| # - run: | ||
| # name: "[r-release] Install dependencies" | ||
| # command: | | ||
| # sudo apt update && sudo apt install -y pandoc | ||
| # R -q -e "install.packages('pak', repos = 'https://r-lib.github.io/p/pak/devel')" | ||
| # R -q -e "if (grepl('Ubuntu', Sys.info()[['version']])) {options(repos = c(CRAN = sprintf('https://packagemanager.rstudio.com/all/__linux__/%s/latest', system('lsb_release -cs', intern = TRUE))))}; pak::local_install_dev_deps()" | ||
| # # R -q -e "pak::pkg_install(c('alan-turing-institute/distr6', 'xoopR/param6', 'mlr-org/mlr3proba'))" | ||
| # R -q -e "pak::local_install()" | ||
|
|
||
| - run: | ||
| name: "Render book" | ||
| no_output_timeout: 60m | ||
| command: | | ||
| sudo apt update && sudo apt install -y gdebi-core curl | ||
| curl -sL -O https://github.com/quarto-dev/quarto-cli/releases/download/v1.1.149/quarto-1.1.149-linux-amd64.deb | ||
| sudo gdebi -n -qq quarto-1.1.149-linux-amd64.deb | ||
| quarto render book/ | ||
| # - run: | ||
| # name: "Render book" | ||
| # no_output_timeout: 60m | ||
| # command: | | ||
| # sudo apt update && sudo apt install -y gdebi-core curl | ||
| # curl -sL -O https://github.com/quarto-dev/quarto-cli/releases/download/v1.1.149/quarto-1.1.149-linux-amd64.deb | ||
| # sudo gdebi -n -qq quarto-1.1.149-linux-amd64.deb | ||
| # quarto render book/ | ||
|
|
||
| - run: | ||
| name: "Add .lycheeignore" | ||
| command: cp .lycheeignore book/_book/.lycheeignore | ||
| # - run: | ||
| # name: "Add .lycheeignore" | ||
| # command: cp .lycheeignore book/_book/.lycheeignore | ||
|
|
||
| # save R pkg cache ------------------------------------------------------- | ||
| - save_cache: | ||
| key: R-package-library-{{ checksum "/tmp/_tmp_file" }} | ||
| paths: | ||
| - /usr/local/lib/R/site-library | ||
| # deploy: | ||
| # environment: | ||
| # # if you use bookdown or blogdown, replace "PKGDOWN" by the respective | ||
| # # capitalized term. This also might need to be done in tic.R | ||
| # BUILD_PKGDOWN: true | ||
| # # save R pkg cache ------------------------------------------------------- | ||
| # - save_cache: | ||
| # key: R-package-library-{{ checksum "/tmp/_tmp_file" }} | ||
| # paths: | ||
| # - /usr/local/lib/R/site-library | ||
| # # deploy: | ||
| # # environment: | ||
| # # # if you use bookdown or blogdown, replace "PKGDOWN" by the respective | ||
| # # # capitalized term. This also might need to be done in tic.R | ||
| # # BUILD_PKGDOWN: true | ||
|
|
||
| # docker: | ||
| # - image: rocker/verse | ||
| # steps: | ||
| # - checkout | ||
| # # docker: | ||
| # # - image: rocker/verse | ||
| # # steps: | ||
| # # - checkout | ||
|
|
||
| # - run: echo "$(date '+%d-%m')-r-release" > /tmp/_tmp_file | ||
| # - restore_cache: | ||
| # key: R-package-library-{{ checksum "/tmp/_tmp_file" }} | ||
| # # - run: echo "$(date '+%d-%m')-r-release" > /tmp/_tmp_file | ||
| # # - restore_cache: | ||
| # # key: R-package-library-{{ checksum "/tmp/_tmp_file" }} | ||
|
|
||
| # - run: | ||
| # name: Deploy | ||
| # command: | | ||
| # sudo apt update && sudo apt install -y pandoc | ||
| # R -q -e "install.packages('pak', repos = 'https://r-lib.github.io/p/pak/devel')" | ||
| # R -q -e "if (grepl('Ubuntu', Sys.info()[['version']])) {options(repos = c(CRAN = sprintf('https://packagemanager.rstudio.com/all/__linux__/%s/latest', system('lsb_release -cs', intern = TRUE))))}; pak::pkg_install('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" | ||
| # R -q -e 'tic::before_deploy()' | ||
| # R -q -e 'tic::deploy()' | ||
| # R -q -e 'tic::after_deploy()' | ||
| # # - run: | ||
| # # name: Deploy | ||
| # # command: | | ||
| # # sudo apt update && sudo apt install -y pandoc | ||
| # # R -q -e "install.packages('pak', repos = 'https://r-lib.github.io/p/pak/devel')" | ||
| # # R -q -e "if (grepl('Ubuntu', Sys.info()[['version']])) {options(repos = c(CRAN = sprintf('https://packagemanager.rstudio.com/all/__linux__/%s/latest', system('lsb_release -cs', intern = TRUE))))}; pak::pkg_install('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" | ||
| # # R -q -e 'tic::before_deploy()' | ||
| # # R -q -e 'tic::deploy()' | ||
| # # R -q -e 'tic::after_deploy()' | ||
|
|
||
| workflows: | ||
| build-and-deploy: | ||
| jobs: | ||
| - r-release | ||
| # - deploy: | ||
| # requires: | ||
| # - r-release | ||
| # workflows: | ||
| # build-and-deploy: | ||
| # jobs: | ||
| # - r-release | ||
| # # - deploy: | ||
| # # requires: | ||
| # # - r-release | ||
|
|
||
| # CRON job daily at 4 am in the morning | ||
| # - runs the "build" job on the master branch and builds package cache | ||
| nightly: | ||
| triggers: | ||
| - schedule: | ||
| cron: "0 4 * * *" | ||
| filters: | ||
| branches: | ||
| only: | ||
| - master | ||
| - main | ||
| - cran-* | ||
| - pak | ||
| jobs: | ||
| - r-release | ||
| # Custom user code ------------------------------------------------------------- | ||
| # # CRON job daily at 4 am in the morning | ||
| # # - runs the "build" job on the master branch and builds package cache | ||
| # nightly: | ||
| # triggers: | ||
| # - schedule: | ||
| # cron: "0 4 * * *" | ||
| # filters: | ||
| # branches: | ||
| # only: | ||
| # - master | ||
| # - main | ||
| # - cran-* | ||
| # - pak | ||
| # jobs: | ||
| # - r-release | ||
| # # Custom user code ------------------------------------------------------------- |
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|---|---|---|
| @@ -1,104 +1,104 @@ | ||
| on: | ||
| workflow_dispatch: | ||
| push: | ||
| branches: | ||
| - main | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| schedule: | ||
| - cron: "0 4 * * *" | ||
|
|
||
| name: mlr3book | ||
|
|
||
| jobs: | ||
| R-CMD-check: | ||
| runs-on: ${{ matrix.config.os }} | ||
|
|
||
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - { | ||
| os: ubuntu-20.04, | ||
| r: "release", | ||
| rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", | ||
| } | ||
|
|
||
| env: | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| RSPM: ${{ matrix.config.rspm }} | ||
| # use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes} | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v3 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
|
|
||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
|
|
||
| - name: Setup tinytex | ||
| uses: r-lib/actions/setup-tinytex@v2 | ||
|
|
||
| - uses: quarto-dev/quarto-actions/setup@v2 | ||
|
|
||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
|
|
||
| # set date/week for use in cache creation | ||
| # https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970 | ||
| # - cache R packages daily | ||
| - name: "[Cache] Prepare daily timestamp for cache" | ||
| if: runner.os != 'Windows' | ||
| id: date | ||
| run: echo "::set-output name=date::$(date '+%d-%m')" | ||
|
|
||
| - name: "[Cache] Cache R packages" | ||
| if: runner.os != 'Windows' | ||
| uses: pat-s/always-upload-cache@v3 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | ||
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | ||
|
|
||
| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| run: | | ||
| while read -r cmd | ||
| do | ||
| eval sudo $cmd | ||
| done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")') | ||
| - name: Install dependencies | ||
| run: make install | ||
|
|
||
| - name: Install mlr3proba from R-universe | ||
| run: | | ||
| remotes::install_github("alan-turing-institute/distr6") | ||
| remotes::install_github("xoopR/param6") | ||
| install.packages('mlr3proba', repos = 'https://mlr-org.r-universe.dev') | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Render book | ||
| run: quarto render book/ | ||
|
|
||
| - name: Add .lycheeignore | ||
| run: cp .lycheeignore book/_book/.lycheeignore | ||
|
|
||
| - name: Deploy | ||
| if: ${{ github.event_name == 'push' }} | ||
| uses: JamesIves/github-pages-deploy-action@v4 | ||
| with: | ||
| token: ${{ secrets.GITHUB_TOKEN }} | ||
| branch: gh-pages | ||
| folder: book/_book | ||
| single-commit: true | ||
| # on: | ||
| # workflow_dispatch: | ||
| # push: | ||
| # branches: | ||
| # - main | ||
| # pull_request: | ||
| # branches: | ||
| # - main | ||
| # schedule: | ||
| # - cron: "0 4 * * *" | ||
|
|
||
| # name: mlr3book | ||
|
|
||
| # jobs: | ||
| # R-CMD-check: | ||
| # runs-on: ${{ matrix.config.os }} | ||
|
|
||
| # name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
|
|
||
| # strategy: | ||
| # fail-fast: false | ||
| # matrix: | ||
| # config: | ||
| # - { | ||
| # os: ubuntu-20.04, | ||
| # r: "release", | ||
| # rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", | ||
| # } | ||
|
|
||
| # env: | ||
| # R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| # RSPM: ${{ matrix.config.rspm }} | ||
| # # use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes} | ||
| # GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| # steps: | ||
| # - uses: actions/checkout@v3 | ||
|
|
||
| # - uses: r-lib/actions/setup-r@v2 | ||
| # with: | ||
| # r-version: ${{ matrix.config.r }} | ||
|
|
||
| # - uses: r-lib/actions/setup-pandoc@v2 | ||
|
|
||
| # - name: Setup tinytex | ||
| # uses: r-lib/actions/setup-tinytex@v2 | ||
|
|
||
| # - uses: quarto-dev/quarto-actions/setup@v2 | ||
|
|
||
| # - name: Query dependencies | ||
| # run: | | ||
| # install.packages('remotes') | ||
| # saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| # writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| # shell: Rscript {0} | ||
|
|
||
| # # set date/week for use in cache creation | ||
| # # https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970 | ||
| # # - cache R packages daily | ||
| # - name: "[Cache] Prepare daily timestamp for cache" | ||
| # if: runner.os != 'Windows' | ||
| # id: date | ||
| # run: echo "::set-output name=date::$(date '+%d-%m')" | ||
|
|
||
| # - name: "[Cache] Cache R packages" | ||
| # if: runner.os != 'Windows' | ||
| # uses: pat-s/always-upload-cache@v3 | ||
| # with: | ||
| # path: ${{ env.R_LIBS_USER }} | ||
| # key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | ||
| # restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}} | ||
|
|
||
| # - name: Install system dependencies | ||
| # if: runner.os == 'Linux' | ||
| # run: | | ||
| # while read -r cmd | ||
| # do | ||
| # eval sudo $cmd | ||
| # done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")') | ||
|
|
||
| # - name: Install dependencies | ||
| # run: make install | ||
|
|
||
| # - name: Install mlr3proba from R-universe | ||
| # run: | | ||
| # remotes::install_github("alan-turing-institute/distr6") | ||
| # remotes::install_github("xoopR/param6") | ||
| # install.packages('mlr3proba', repos = 'https://mlr-org.r-universe.dev') | ||
| # shell: Rscript {0} | ||
|
|
||
| # - name: Render book | ||
| # run: quarto render book/ | ||
|
|
||
| # - name: Add .lycheeignore | ||
| # run: cp .lycheeignore book/_book/.lycheeignore | ||
|
|
||
| # - name: Deploy | ||
| # if: ${{ github.event_name == 'push' }} | ||
| # uses: JamesIves/github-pages-deploy-action@v4 | ||
| # with: | ||
| # token: ${{ secrets.GITHUB_TOKEN }} | ||
| # branch: gh-pages | ||
| # folder: book/_book | ||
| # single-commit: true |
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