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An R Shiny web app for interactive trait data analysis in plant breeding programs, integrated with BreedBase.

R 2 Updated Oct 5, 2021

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

Python 18 3 Updated Sep 18, 2024

R Wrapper for PolyOrigin.jl

Julia 5 2 Updated Jan 6, 2021

QTL analysis in diallel populations

R 11 4 Updated Jan 2, 2024

An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny

R 106 106 Updated Jun 30, 2020

R/qtl: A QTL mapping environment

R 79 46 Updated Aug 22, 2024

An R package for import, QC and analysis of Illumina Infinium genotyping arrays

R 33 10 Updated Mar 20, 2018

Genotype Calling with Uncertainty from Sequencing Data in Polyploids πŸŒπŸ“πŸ₯”πŸ πŸ₯

HTML 28 9 Updated Dec 16, 2023

🀹 Shiny tips & tricks for improving your apps and solving common problems

R 1,206 386 Updated Aug 18, 2024

Flexible Genotyping of Polyploids using Next Generation Sequencing Data

R 28 8 Updated Oct 22, 2024

Super high performance interactive heatmap software

JavaScript 30 6 Updated Nov 19, 2018

Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses

R 36 23 Updated Dec 27, 2023
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