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The addition of the duty_csv app to the end of all workflows. This consists of the addition of a new function to create the dx run command in the same way as for multiqc, and addition of config variables containing the inputs
Alteration to the way the TSO500 pipeline is set off so that it no longer requires use of the output parser app. This facilitates easier updating of the pipeline, and brings it closer to the set up of the other pipelines, with set off using the dx run command bash script which contains all run commands, as opposed to the commands being split between the workstation and DNAnexus
Addition of the --wait flag to the tso docker run command, to delay downstream tasks until all output files have been created
Update the version of fastqc used for ArcherDX and TSO samples