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Development #12

Merged
merged 60 commits into from
Jan 16, 2025
Merged

Development #12

merged 60 commits into from
Jan 16, 2025

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sedorfer
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Description

Provide a brief description of the PR's purpose here.

Todos

Notable points that this PR has either accomplished or will accomplish.

  • TODO 1

Questions

  • Question1

Status

  • Ready to go

sedorfer and others added 30 commits March 29, 2024 14:29
@sedorfer
added toy_model dir to .gitignore
2831066
@sedorfer
removed toymodels from gitignore
dc831d9
@sedorfer
Added functions from tutorial
842826a
@sedorfer
Implemented a first parser for the files into a list
a62348a
@sedorfer
added new features to the ClassAndFunctionVisitor
7d28c65
@sedorfer
Restructured CFVisitor and included more functionalities
249b0d2
@sedorfer
added more file cleaning and decorator information
58b1088
@sedorfer
Added ast.call parser
f5b497b
@sedorfer
added another dir to tryout the class
3cac7d5
@sedorfer
Merge pull request #1 from molinfo-vienna/feat-ClassAndFunctionVisitor
3a01ede 
Feature Class and Function visitor
@sedorfer
restructured code
fd01365
@sedorfer
refactored file parser into a class
1e9030b
@sedorfer
Added class for knowledge graph handeling and added methods for creat…
ae6166b 
…ing project structure nodes and relationships
@sedorfer
WIP GraphManagers
b42962b
@sedorfer
Updated Knowledge Graph Manager to handle most of the Doc properties
d79e816
@sedorfer
Merge pull request #2 from molinfo-vienna/feat-graphCreation
45843b1 
Merge graph creation into development
@sedorfer
initial version of a rag system
1f5700d
@sedorfer
first dashboard for the rag
8927d37
@sedorfer
return the final rag output
3b637c5
@sedorfer
Added second model and changed prompt structure
aaa207a
@sedorfer
add comment parsing
b6e0660
@sedorfer
Merge pull request #3 from molinfo-vienna/feat-docparser
7546254 
add comment parsing to docparser
@sedorfer
debug parameter and function relationship
60d7d55
@sedorfer
debug parameter comment
239a0ac
@sedorfer
Merge pull request #4 from molinfo-vienna/feat-docparser
3055958 
debug parameter comment
@sedorfer
debug parameter and function relationship
fff6215
@sedorfer
Merge branch 'feat-knowledgeGraph' of https://github.com/molinfo-vien…
241d97b 
…na/graphRAG into feat-knowledgeGraph
@sedorfer
incorporate comments into knowledge graph
a168151
@sedorfer
Merge pull request #5 from molinfo-vienna/feat-knowledgeGraph
3a0233b 
Feat knowledge graph
@sedorfer
Merge pull request #6 from molinfo-vienna/feat_rag
65d8cfb 
Feat rag
sedorfer and others added 28 commits November 10, 2024 12:16
@sedorfer
first benchmark and change of benchmark questions
aa06a71
@sedorfer
Merge pull request #7 from molinfo-vienna/feat-benchmarking
c35f6aa 
Feat benchmarking
@sedorfer
dashboard changes
4d728cb
@sedorfer
benchmark updates and restructuring
ef9620b
@sedorfer
rag structure update
4a1de03
@sedorfer
Styling and main components of dashboard
a9c1b5f
@sedorfer
update of dashboard navbar
e43387d
@sedorfer
first batch benchmarking
21119f3
@sedorfer
benchmarks
e2471e7
@sedorfer
type hinting and commenting
292bb5a
@sedorfer
refactoring and type hinting for knowledge graph classes
010e684
@sedorfer
refactoring of the rag system
8d448ce
@sedorfer
Merge pull request #8 from molinfo-vienna/refactoring
8db36b7 
Refactoring
@sedorfer
Merge branch 'development' into benchmarking
bc0edac
@sedorfer
Merge pull request #9 from molinfo-vienna/benchmarking
6aa8cb8 
Benchmarking
@sedorfer
manual benchmark
236b5b9
@sedorfer
first code for evaluation
aa924d0
@sedorfer
first part of new evaluation
156dc6f
@sedorfer
second round of benchmarking
faf125a
@sedorfer
last benchmarking
02d2f14
@sedorfer
last benchmarking
b0cdf5d
@sedorfer
benchmark evaluation
30cff02
@sedorfer
added citation
8435bf5
@sedorfer
Merge pull request #10 from molinfo-vienna/benchmarking
0944337 
Benchmarking
@sedorfer
Merge branch 'development' into feat-dashboard
5366748
@sedorfer
Merge pull request #11 from molinfo-vienna/feat-dashboard
67c9093 
Feat dashboard
@sedorfer
updates of the dashboard
83d4fde
@sedorfer
put sensitive data into config file
8810363
@sedorfer sedorfer merged commit fec749c into main Jan 16, 2025
0 of 9 checks passed
@sedorfer sedorfer deleted the development branch January 16, 2025 19:37
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@sedorfer