Monarch Semantic Similarity Profiles

• Profiles Directory: profiles

Ontologies used

PHENIO-FLAT

• ID: phenio-flat

PHENIO-RELEASE

• ID: phenio-release
• Mirror From: https://github.com/monarch-initiative/phenio/releases/latest/download/phenio.owl.gz

PHENIO-EQUIVALENT

• ID: phenio-equivalent

PHENIO-MONARCH

• ID: phenio-monarch

UPHENO1

• ID: upheno1
• Mirror From: https://raw.githubusercontent.com/obophenotype/upheno/refs/heads/master/upheno.owl

HP

• ID: hp

• Mirror From: http://purl.obolibrary.org/obo/hp.owl

• Root term: HP:0000118

MP

• ID: mp

• Mirror From: http://purl.obolibrary.org/obo/mp.owl

• Root term: MP:0000001

ZP

• ID: zp

• Mirror From: http://purl.obolibrary.org/obo/zp.owl

• Root term: ZP:0000000

FBCV

• ID: fbcv

• Mirror From: http://purl.obolibrary.org/obo/dpo.owl

• Root term: FBcv:0001347

XPO

• ID: xpo

• Mirror From: http://purl.obolibrary.org/obo/xpo.owl

• Root term: XPO:00000000

Semantic Similarity Profiles

HP-MP (phenio-release), semsimian, with similarity threshold 0.7

• Subset: hp-mp

• Method: semsimian

• Ontology: phenio-release

• Threshold: 0.7

• Branches:

  • Subject: UPHENO:0001001
  • Object: UPHENO:0001001

• Prefixes:

  • Subject: hp
  • Object: mp

HP-HP (phenio-release), semsimian, with similarity threshold 0.7

• Subset: hp-hp

• Method: semsimian

• Ontology: phenio-release

• Threshold: 0.7

• Branches:

  • Subject: UPHENO:0001001
  • Object: UPHENO:0001001

• Prefixes:

  • Subject: hp
  • Object: hp

HP-ZP (upheno1), semsimian, with similarity threshold 0.7

• Subset: hp-zp

• Method: semsimian

• Ontology: upheno1

• Threshold: 0.7

• Branches:

  • Subject: UPHENO:0001001
  • Object: UPHENO:0001001

• Prefixes:

  • Subject: hp
  • Object: zp

HP-HP (phenio-monarch), semsimian, with similarity threshold 0.7

• Subset: hp-hp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: hp

• IC: phenio_monarch_hp_ic.tsv

HP-MP (phenio-monarch), semsimian, with similarity threshold 0.7

• Subset: hp-mp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: mp

• IC: phenio_monarch_hp_mp_ic.tsv

HP-ZP (phenio-monarch), semsimian, with similarity threshold 0.7

• Subset: hp-zp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: zp

• IC: phenio_monarch_hp_zp_ic.tsv

HP-XPO (phenio-monarch), semsimian, with similarity threshold 0.4

• Subset: hp-xpo

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.4

• Prefixes:

  • Subject: hp
  • Object: xpo

• IC: phenio_monarch_hp_xpo_ic.tsv

HP-HP (phenio-monarch), semsimian, with similarity threshold 0.4

• Subset: hp-hp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.4

• Prefixes:

  • Subject: hp
  • Object: hp

HP-MP (phenio-monarch), semsimian, with similarity threshold 0.4

• Subset: hp-mp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.4

• Prefixes:

  • Subject: hp
  • Object: mp

HP-ZP (phenio-monarch), semsimian, with similarity threshold 0.4

• Subset: hp-zp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.4

• Prefixes:

  • Subject: hp
  • Object: zp

HP-XPO (phenio-monarch), semsimian, with similarity threshold 0.4

• Subset: hp-xpo

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.4

• Prefixes:

  • Subject: hp
  • Object: xpo

HP-HP (phenio-monarch), semsimian, with similarity threshold 0.7

• Subset: hp-hp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: hp

HP-MP (phenio-monarch), semsimian, with similarity threshold 0.7

• Subset: hp-mp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: mp

HP-ZP (phenio-monarch), semsimian, with similarity threshold 0.7

• Subset: hp-zp

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: zp

HP-XPO (phenio-monarch), semsimian, with similarity threshold 0.7

• Subset: hp-xpo

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: xpo

HP-FBCV (phenio-monarch), semsimian, with similarity threshold 0.4

• Subset: hp-fbcv

• Method: semsimian

• Ontology: phenio-monarch

• Threshold: 0.4

• Prefixes:

  • Subject: hp
  • Object: fbcv

HP-HP (phenio-flat), semsimian, with similarity threshold 0.7

• Subset: hp-hp

• Method: semsimian

• Ontology: phenio-flat

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: hp

HP-MP (phenio-flat), semsimian, with similarity threshold 0.7

• Subset: hp-mp

• Method: semsimian

• Ontology: phenio-flat

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: mp

HP-ZP (phenio-flat), semsimian, with similarity threshold 0.7

• Subset: hp-zp

• Method: semsimian

• Ontology: phenio-flat

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: zp

HP-HP (phenio-equivalent), semsimian, with similarity threshold 0.7

• Subset: hp-hp

• Method: semsimian

• Ontology: phenio-equivalent

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: hp

HP-MP (phenio-equivalent), semsimian, with similarity threshold 0.7

• Subset: hp-mp

• Method: semsimian

• Ontology: phenio-equivalent

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: mp

HP-ZP (phenio-equivalent), semsimian, with similarity threshold 0.7

• Subset: hp-zp

• Method: semsimian

• Ontology: phenio-equivalent

• Threshold: 0.7

• Prefixes:

  • Subject: hp
  • Object: zp