Merge pull request #709 from monarch-initiative/_TEST_build_develop_2…

…3Nov2024 DO NOT MERGE - Test Build files from `develop` (23Nov2024)
monarch-initiative · Nov 25, 2024 · 4c08732 · 4c08732
2 parents 193771f + 3954a78
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diff --git a/docs/metrics/doid.md b/docs/metrics/doid.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/doid.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/doid.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/gard.md b/docs/metrics/gard.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/gard.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/gard.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10cm.md b/docs/metrics/icd10cm.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/icd10cm.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/icd10cm.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10who.md b/docs/metrics/icd10who.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/icd10who.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/icd10who.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd11foundation.md b/docs/metrics/icd11foundation.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd11foundation.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/icd11foundation.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/icd11foundation.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ncit.md b/docs/metrics/ncit.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/ncit.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/ncit.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/omim.md b/docs/metrics/omim.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/omim.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/omim.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ordo.md b/docs/metrics/ordo.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-21/ordo.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-11-23/ordo.owl
 
 ### Entities and axioms
 

diff --git a/docs/reports/migrate_ncit.md b/docs/reports/migrate_ncit.md
diff --git a/src/mappings/gard.sssom.tsv b/src/mappings/gard.sssom.tsv
@@ -9,7 +9,7 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/fadd3792-7a38-42ae-821d-a5e8df8e095a
+# mapping_set_id: https://w3id.org/sssom/mappings/587b05f4-21a5-45c0-ab6c-280e162498f2
 subject_id	subject_label	predicate_id	object_id	mapping_justification
 obo:GARD_1	GRACILE syndrome	skos:exactMatch	Orphanet:53693	semapv:UnspecifiedMatching
 obo:GARD_1	GRACILE syndrome	skos:narrowMatch	OMIM:603358	semapv:UnspecifiedMatching

diff --git a/src/mappings/icd10cm.sssom.tsv b/src/mappings/icd10cm.sssom.tsv
@@ -6,6 +6,6 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/062497bd-5eac-4db9-bb91-91a624065e94
+# mapping_set_id: https://w3id.org/sssom/mappings/2bedfbd5-73f3-49b5-a77a-483474ec900c
 
 
diff --git a/src/mappings/icd10who.sssom.tsv b/src/mappings/icd10who.sssom.tsv
@@ -6,6 +6,6 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/74f88aa8-505a-4118-ab27-a8f67894b750
+# mapping_set_id: https://w3id.org/sssom/mappings/45723c0c-b3da-412e-802c-dba57dd3394f
 
 
diff --git a/src/mappings/icd11foundation.sssom.tsv b/src/mappings/icd11foundation.sssom.tsv
@@ -6,6 +6,6 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/028a6de9-be78-4feb-94c8-0da96bfb60a2
+# mapping_set_id: https://w3id.org/sssom/mappings/2b56e2ed-453e-4172-bcaf-ec8c13bac3c0
 
 
diff --git a/src/mappings/mondo-nando.sssom.tsv b/src/mappings/mondo-nando.sssom.tsv
@@ -15,7 +15,7 @@
 # mapping_provider: MONDO:NANDO
 # mapping_set_description: This mapping set is manually curated by the NANDO team at
 #   nanbyodata.jp.
-# mapping_set_id: https://w3id.org/sssom/mappings/056ce54c-b213-4c8b-80e2-1f9d7add42e0
+# mapping_set_id: https://w3id.org/sssom/mappings/7f726b69-2bde-4dd5-bc7c-67224477ed93
 # mapping_set_title: NANDO - Mondo mappings provided by nanbyodata.jp
 subject_id	subject_label	predicate_id	object_id	object_label	mapping_justification
 MONDO:0000050	isolated congenital growth hormone deficiency	skos:closeMatch	NANDO:2200317	Congenital growth hormone deficiency	semapv:MappingInversion

diff --git a/src/mappings/ncit.sssom.tsv b/src/mappings/ncit.sssom.tsv
@@ -9,7 +9,7 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/02eb0b21-398e-4fb8-9f5d-0a41af041cd1
+# mapping_set_id: https://w3id.org/sssom/mappings/081c05a7-0052-4aeb-8298-5d2f5563a7eb
 subject_id	subject_label	predicate_id	object_id	mapping_justification
 NCIT:C103222	Popliteal Fossa	oboInOwl:hasDbXref	UBERON:0013069	semapv:UnspecifiedMatching
 NCIT:C103384	Common Iliac Lymph Node	oboInOwl:hasDbXref	UBERON:0015878	semapv:UnspecifiedMatching

diff --git a/src/ontology/external/gard.robot.owl b/src/ontology/external/gard.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/mondo-clingen.robot.owl b/src/ontology/external/mondo-clingen.robot.owl
@@ -9,7 +9,7 @@
      xmlns:mondo="http://purl.obolibrary.org/obo/mondo#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/mondo-efo.robot.owl b/src/ontology/external/mondo-efo.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/mondo-medgen.robot.owl b/src/ontology/external/mondo-medgen.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/mondo-omim-genes.robot.owl b/src/ontology/external/mondo-omim-genes.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/mondo-otar-subset.robot.owl b/src/ontology/external/mondo-otar-subset.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/nando-mappings.robot.owl b/src/ontology/external/nando-mappings.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/nord.robot.owl b/src/ontology/external/nord.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/ordo-subsets.robot.owl b/src/ontology/external/ordo-subsets.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/processed-gard.robot.owl b/src/ontology/external/processed-gard.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/processed-mondo-clingen.robot.owl b/src/ontology/external/processed-mondo-clingen.robot.owl
@@ -9,7 +9,7 @@
      xmlns:mondo="http://purl.obolibrary.org/obo/mondo#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/processed-mondo-efo.robot.owl b/src/ontology/external/processed-mondo-efo.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/ontology/external/processed-mondo-medgen.robot.owl b/src/ontology/external/processed-mondo-medgen.robot.owl
@@ -8,7 +8,7 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/external/nord.robot.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-22/nord.robot.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/external/2024-11-23/nord.robot.owl"/>
     </owl:Ontology>