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Build out MIC extraction template #495

Merged
merged 21 commits into from
Dec 20, 2024
Merged

Build out MIC extraction template #495

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b18f3cc
Update poetry lock
caufieldjh Dec 18, 2024
af485d7
Rename micronutrient template to mic
caufieldjh Dec 18, 2024
880f6f7
Revise MIC tempalate to extract nutrient to disease rels
caufieldjh Dec 18, 2024
c5aa925
Class name change; descriptions
caufieldjh Dec 20, 2024
3d375cf
Minor class name tweak
caufieldjh Dec 20, 2024
91383a1
Add nutrient vs nutrient relationships
caufieldjh Dec 20, 2024
7b7e5ad
Add nutrient to phenotype relationships
caufieldjh Dec 20, 2024
c10af08
prompt tuning
caufieldjh Dec 20, 2024
99cdb0f
More prompt tuning for phenotypes
caufieldjh Dec 20, 2024
e31787e
Add NutrientToBiologicalProcessRelationship
caufieldjh Dec 20, 2024
fcf2104
Minor prompt tuning
caufieldjh Dec 20, 2024
3c3c0ab
Add NutrientToHealthStatusRelationship
caufieldjh Dec 20, 2024
dfccd69
small fix for NutrientToBiologicalProcessRelationship
caufieldjh Dec 20, 2024
5ebc50c
Tuning for nutrient_to_nutrient_relationships
caufieldjh Dec 20, 2024
96b8f44
Tuning for nutrient_to_biological_process_relationships
caufieldjh Dec 20, 2024
096fc3b
Add NutrientToSourceRelationship
caufieldjh Dec 20, 2024
295080f
Comment out redundant nutrient_terms slot
caufieldjh Dec 20, 2024
faacb2e
First pass at reference extraction
caufieldjh Dec 20, 2024
4ba63a2
Second pass at reference extraction
caufieldjh Dec 20, 2024
54a65ba
Extracting full reflist isn't working. Commenting out
caufieldjh Dec 20, 2024
508f826
Tuning reference extraction
caufieldjh Dec 20, 2024
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