Switched to latexmk instead of make #2

- Also removed style and lexer submodules

.gitmodules

@@ -1,9 +1,3 @@
-[submodule "style"]
-	path = style
-	url = https://github.com/sisl/pygments-style-algforopt
-[submodule "lexer"]
-	path = lexer
-	url = https://github.com/sisl/pygments-julia
 [submodule "juliaplots.sty"]
 	path = juliaplots.sty
 	url = https://github.com/sisl/juliaplots.sty

README.md

@@ -81,35 +81,28 @@ Clone the repository to a location of your choosing:
 git clone https://github.com/mossr/julia-tufte-beamer.git
 ```
 
-Initialize and update the submodules:
+Initialize and update the submodule ([juliaplots.sty](https://github.com/sisl/juliaplots.sty)):
 ```
 git submodule init
 git submodule update
 ```
 
-Compile the style:
+Install lexer and style (may need `pip3` instead):
 ```
-cd style
-sudo python setup.py install
-cd ..
-```
-
-Compile the lexer:
-```
-cd lexer
-sudo python setup.py install
-cd ..
+pip install --upgrade git+https://github.com/sisl/pygments-julia#egg=pygments_julia
+pip install --upgrade git+https://github.com/sisl/pygments-style-algfordm#egg=pygments_style_algfordm
 ```
 
 Install the required Julia packages.
 ```
-make install
+julia jl/install.jl
 ```
 
 Install `pdf2svg`, which is used by PGFPlots (we assume Ubuntu - other operating systems may install pdf2svg differently):
 ```
 sudo apt-get install pdf2svg
 ```
+For `pdf2svg` on Windows (place `dist-*` directory on PATH): https://github.com/jalios/pdf2svg-windows
 
 Install [pgfplots](https://ctan.org/pkg/pgfplots).
 
@@ -119,18 +112,21 @@ We require pythontex 0.17, which was just recently tagged. You will probably hav
 
 ## Test
 
-Running `make test` pulls all the code and then runs all tests in `juliatest` blocks. See `runtests.jl` for details.
+Running the following pulls all the code and then runs all tests in `juliatest` blocks. See `runtests.jl` for details.
+
+```
+julia jl/runtests.jl
+```
 
 ## Compilation
 
-* `make compile` compiles the whole presentation (`make main` works too)
-* `make sandbox` will compile `tex/sandbox.tex` (meant for development, e.g., single slides)
-* `make quick` will only run `lualatex` (skipping `pythontex` and `biber` for quick LaTeX compilation)
-    * `make quick-sandbox` does quick compilation for `tex/sandbox.tex`
-* `make clean` removes all generated files except `main.pdf` and `sandbox.pdf`
-* `make full` runs `clean` and `compile`
-    * `make full-sandbox` does full clean/compilation for `tex/sandbox.tex`
-* `make save` copies the `main.pdf` file to `presentation.pdf` (which you can modify in the makefile)
+Install `latexmk` from: https://mg.readthedocs.io/latexmk.html#installation
+
+* `latexmk` will compile everything (see `output/` for PDF).
+    * `latexmk` will intelligently compile only the necessary bits.
+* `latexmk -c` will clean up generated files.
+* `latexmk -C` will clean up generated files (including `.pdf`).
+* `latexmk tex/sandbox.tex` will compile `tex/sandbox.tex` (meant for development, e.g., single files)
 
 
 ## Directory structure

latexmkrc

@@ -0,0 +1,45 @@
+ensure_path( 'TEXINPUTS', './tex//' );
+ensure_path( 'BIBINPUTS', './tex//' );
+
+$pdf_mode = 4;
+$out_dir = 'output';
+$aux_dir = 'output';
+
+$MSWin_back_slash = 0;
+
+$clean_ext .= " pythontex-files-%R/* pythontex-files-%R";
+push @generated_exts, 'pytxcode';
+
+$pythontex = 'pythontex %O %S';
+$extra_rule_spec{'pythontex'}  = [ 'internal', '', 'mypythontex', "%Y%R.pytxcode",  "%Ypythontex-files-%R/%R.pytxmcr",    "%R", 1 ];
+
+sub mypythontex {
+   my $result_dir = $aux_dir1."pythontex-files-$$Pbase";
+   my $ret = Run_subst( $pythontex, 2 );
+   rdb_add_generated( glob "$result_dir/*" );
+   my $fh = new FileHandle $$Pdest, "r";
+   if ($fh) {
+      while (<$fh>) {
+         if ( /^%PythonTeX dependency:\s+'([^']+)';/ ) {
+         print "Found pythontex dependency '$1'\n";
+             rdb_ensure_file( $rule, $aux_dir1.$1 );
+     }
+      }
+      undef $fh;
+   }
+   else {
+       warn "mypythontex: I could not read '$$Pdest'\n",
+            "  to check dependencies\n";
+   }
+   return $ret;
+}
+
+sub pull_julia_code {
+   system("julia --color=yes jl/pull_julia_code.jl");
+}
+
+pull_julia_code();
+
+$lualatex = "lualatex %O -shell-escape %S";
+
+@default_files = ('main');