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Nextflow Snippets

Snippet is a programming term for a small region of re-usable source code, machine code, or text, and Nextflow is both a Domain-Specific Language for writing data pipelines and a pipeline orchestrator. For more information about Nextflow, check the official site and documentation. For community training material, this link is a greaaaaaat place to start! 😃

This repository contains a collection of numerous solutions I have worked on throughout the past months as a Nextflow and nf-core Developer Advocate at Seqera Labs providing community support to numerous users around the world. I haven't saved all the snippets I created, but as I have now answered over 500 questions in this period, there are indeed quite a few I have kept when I found the solution interesting enough 😆

List of snippets by category

Below, you'll find links to Markdown documents in this repository explaining the issue followed by the snippet that solves it.

Using Channel Operators

Misc

Nextflow Patterns

If you're looking for more snippets, you can find plenty at Nextflow Patterns.

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This repository hosts a large collection of Nextflow snippets

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