Data Analysis for SDs in T2T-CHM13

Rscripts used for figure generation and data anlysis in

Segmental duplications and their variation in a complete human genome

Name		Name	Last commit message	Last commit date
Latest commit History 31 Commits
scripts		scripts
.gitignore		.gitignore
CmpAsmHg38.R		CmpAsmHg38.R
Divergence.R		Divergence.R
Figure1.R		Figure1.R
LPA.R		LPA.R
Old_Style_SD_plots.R		Old_Style_SD_plots.R
README.md		README.md
ShePlot.R		ShePlot.R
Table1.R		Table1.R
Vollger_CHM13_T2T.Rmd		Vollger_CHM13_T2T.Rmd
compare_nhp_large_diffs.R		compare_nhp_large_diffs.R
compare_sd_density.R		compare_sd_density.R
duplicons.R		duplicons.R
duplicons_inacro_flat.R		duplicons_inacro_flat.R
for_main.R		for_main.R
fosmids.R		fosmids.R
histplots.R		histplots.R
inversions.R		inversions.R
load_data.R		load_data.R
meth.R		meth.R
meth_clustered.R		meth_clustered.R
meth_clustered.Rmd		meth_clustered.Rmd
minigraph.R		minigraph.R
minigraph_utils.R		minigraph_utils.R
new_genes.R		new_genes.R
old_and_unused.Rmd		old_and_unused.Rmd
pairwisebetweenallchrs.R		pairwisebetweenallchrs.R
plotutils.R		plotutils.R
sd_length_distributions.R		sd_length_distributions.R
structured-abstract.R		structured-abstract.R
test_circos.R		test_circos.R
what_flanks_svs.R		what_flanks_svs.R
wssd.R		wssd.R
wssd_concodrance.R		wssd_concodrance.R
wssd_sub_regions.R		wssd_sub_regions.R

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