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Update VegAnn released
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mserouar authored May 23, 2023
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<div align="center">

![logo](https://i.ibb.co/W01tp2M/fig-1.png)
![download (1)](https://github.com/mserouar/SegVeg/assets/57948061/82030dac-c7d9-4bf5-a06c-fc73ff0575fa)

**Python module for Senescent Vegetation Image Segmentation based on SVM/XGBoost.**



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## 📚 ABSTRACT

SegVeg is a model for semantic segmentation of RGB images into background, green vegetation and senescent vegetation classes.
Link to iriginal published paper : https://spj.sciencemag.org/journals/plantphenomics/2022/9803570/
Link to original published paper : https://spj.sciencemag.org/journals/plantphenomics/2022/9803570/

### Useful information <a name="start"></a>
### Useful information <a name="start"></a>

The method proposed may be described in two stages.

In the first stage, the whole image is classified into Vegetation/Background mask using a U-net type Deep Learning network.
Then, the segmented vegetation pixels are classified into Green/Senescent vegetation using a binary SVM.

Here, you will only find the Second stage (yellow part in Figure above).
To perform the first stage, please find more information on : ⌚ https://github.com/simonMadec/VegAnn
To perform the first stage, please find more information on : https://github.com/simonMadec/VegAnn


## 📝 Citing

If you find this work useful in your research (Python module, model or Dataset), please cite both papers :

#### Paper Senescent Green Vegetation segmentation <a name="Paper"></a>

Serouart Mario Madec Simon David Etienne Velumani Kaaviya Lopez Lozano Raul Weiss Marie Baret Frédéric . SegVeg: Segmenting RGB Images into Green and Senescent Vegetation by Combining Deep and Shallow Methods. Plant Phenomics. 2022;2022:DOI:10.34133/2022/9803570

#### Paper Vegatation Background segmentation <a name="Paper"></a>

Madec, S., Irfan, K., Velumani, K. et al. VegAnn, Vegetation Annotation of multi-crop RGB images acquired under diverse conditions for segmentation. Sci Data 10, 302 (2023). https://doi.org/10.1038/s41597-023-02098-y



## ☸️ How to use

Simply lauch the given .ipynb google collab in main directory

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Please follow below instructions if you want to know more (Docker, Bash command, Dev mode, Features, Supp. Materials, ...)
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## 📦 DATA <a name="models"></a>

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[[Session 2021-03-17 14-19-59](https://github.com/mserouar/SegVeg/tree/main/docs/DATA/Session%202021-03-17%2014-19-59)] : Test Session

## 📝 Citing

If you find this work useful in your research (Python module, model or Dataset), please cite:

#### Paper <a name="Paper"></a>

```
Serouart Mario Madec Simon David Etienne Velumani Kaaviya Lopez Lozano Raul Weiss Marie Baret Frédéric . SegVeg: Segmenting RGB Images into Green and Senescent Vegetation by Combining Deep and Shallow Methods. Plant Phenomics. 2022;2022:DOI:10.34133/2022/9803570
```

## ☸️ How to use

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