CloudReg

Loading and handling microscopy data in blender

Bringing your code and work to the conversations you care about with the GitHub and Microsoft integration

Read and write Neuroglancer datasets programmatically.

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Notebooks to interact with the CAVE infrastructure, hosted by the Lichtman Lab and VCG at Harvard.

Python scripts to analyse images of USAF test targets and edges

This repository has now moved to GitLab.com/openflexure/openflexure-microscope

TEMCA acquisiton database

Open-Source HomeKit Surveillance Camera

An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)

ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)

ArrayBot API

napari: a fast, interactive, multi-dimensional image viewer for python

Code and data for the 2021 Open for Science tutorial for EM connectomics.

An open access book on scientific visualization using python and matplotlib

jupyter notebook extension to visualize numpy arrays with the neuroglancer

A collection of notebooks to provide examples of using Microns-explorer.org datasets

A Video Surveillance OS For Single-board Computers

A project to make a Raspberry Pi driven, HomeKit Enabled camera.

Axon/Myelin segmentation using Deep Learning

align a 3D data set to another

WebGL-based viewer for volumetric data

NeuroDataViz: Web visualization and analysis for neuroimaging datasets. Powered by Neuroglancer.

WebGL-based viewer for volumetric data