Added some PaRe articles

mvankessel-EMC · Sep 15, 2023 · 32cb2ba · 32cb2ba
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diff --git a/Rmd/packageStatuses.Rmd b/Rmd/packageStatuses.Rmd
diff --git a/docs/packageStatuses.html b/docs/packageStatuses.html
@@ -387,14 +387,15 @@ <h1 class="title toc-ignore">Package statuses</h1>
 </ul>
 <table>
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+<col width="18%" />
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+<col width="16%" />
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@@ -406,6 +407,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 <th align="center">Open pull-requests</th>
 <th align="center">Build status</th>
 <th align="center">Coverage</th>
+<th align="center">PaRe</th>
 </tr>
 </thead>
 <tbody>
@@ -433,6 +435,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/Achilles?branch=main"><img
 src="https://codecov.io/github/OHDSI/Achilles/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -458,6 +461,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/Andromeda?branch=main"><img
 src="https://codecov.io/github/OHDSI/Andromeda/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/Andromeda.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -481,6 +485,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/BigKnn?branch=main"><img
 src="https://codecov.io/github/OHDSI/BigKnn/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/BigKnn.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -507,6 +512,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/BrokenAdaptiveRidge?branch=main"><img
 src="https://codecov.io/github/OHDSI/BrokenAdaptiveRidge/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="odd">
 <td align="left"><a href="https://github.com/OHDSI/Capr">Capr</a></td>
@@ -529,6 +535,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/Capr?branch=main"><img
 src="https://codecov.io/github/OHDSI/Capr/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/Capr.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -555,6 +562,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/Characterization?branch=main"><img
 src="https://codecov.io/github/OHDSI/Characterization/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -578,6 +586,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/CirceR?branch=main"><img
 src="https://codecov.io/github/OHDSI/CirceR/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/CirceR.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -604,6 +613,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/CohortDiagnostics?branch=main"><img
 src="https://codecov.io/github/OHDSI/CohortDiagnostics/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/CohortDiagnostics.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -630,6 +641,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/CohortExplorer?branch=main"><img
 src="https://codecov.io/github/OHDSI/CohortExplorer/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -656,6 +668,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/CohortGenerator?branch=main"><img
 src="https://codecov.io/github/OHDSI/CohortGenerator/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/Cohortgenerator.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -681,6 +695,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/CohortMethod?branch=main"><img
 src="https://codecov.io/github/OHDSI/CohortMethod/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/CohortMethod.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -705,6 +721,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/Cyclops?branch=main"><img
 src="https://codecov.io/github/OHDSI/Cyclops/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/Cyclops.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -731,6 +748,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/DatabaseConnector?branch=main"><img
 src="https://codecov.io/github/OHDSI/DatabaseConnector/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/DatabaseConnector.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -757,6 +776,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/DataQualityDashboard?branch=main"><img
 src="https://codecov.io/github/OHDSI/DataQualityDashboard/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -783,6 +803,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/DeepPatientLevelPrediction?branch=main"><img
 src="https://codecov.io/github/OHDSI/DeepPatientLevelPrediction/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -809,6 +830,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/EmpiricalCalibration?branch=main"><img
 src="https://codecov.io/github/OHDSI/EmpiricalCalibration/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/EmpiricalCalibration.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -835,6 +858,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/EnsemblePatientLevelPrediction?branch=main"><img
 src="https://codecov.io/github/OHDSI/EnsemblePatientLevelPrediction/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -859,6 +883,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/Eunomia?branch=main"><img
 src="https://codecov.io/github/OHDSI/Eunomia/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/Eunomia.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -885,6 +910,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/EvidenceSynthesis?branch=main"><img
 src="https://codecov.io/github/OHDSI/EvidenceSynthesis/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/EvidenceSynthesis.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -911,6 +938,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/FeatureExtraction?branch=main"><img
 src="https://codecov.io/github/OHDSI/FeatureExtraction/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/FeatureExtraction.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a href="https://github.com/OHDSI/Hydra">Hydra</a></td>
@@ -933,6 +962,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/Hydra?branch=main"><img
 src="https://codecov.io/github/OHDSI/Hydra/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/Hydra.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -959,6 +989,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/IterativeHardThresholding?branch=main"><img
 src="https://codecov.io/github/OHDSI/IterativeHardThresholding/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/IterativeHardThresholding.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -985,6 +1017,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/MethodEvaluation?branch=main"><img
 src="https://codecov.io/github/OHDSI/MethodEvaluation/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/MethodEvaluation.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -1010,6 +1044,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/OhdsiSharing?branch=main"><img
 src="https://codecov.io/github/OHDSI/OhdsiSharing/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/OhdsiSharing.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -1036,6 +1072,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/OhdsiShinyModules?branch=main"><img
 src="https://codecov.io/github/OHDSI/OhdsiShinyModules/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -1062,6 +1099,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/ParallelLogger?branch=main"><img
 src="https://codecov.io/github/OHDSI/ParallelLogger/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/ParallelLogger.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -1088,6 +1127,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/PatientLevelPrediction?branch=main"><img
 src="https://codecov.io/github/OHDSI/PatientLevelPrediction/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/PatientLevelPrediction.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -1114,6 +1155,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/PhenotypeLibrary?branch=main"><img
 src="https://codecov.io/github/OHDSI/PhenotypeLibrary/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/PhenotypingLibrary.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -1139,6 +1182,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/PheValuator?branch=main"><img
 src="https://codecov.io/github/OHDSI/PheValuator/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -1165,6 +1209,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/ResultModelManager?branch=main"><img
 src="https://codecov.io/github/OHDSI/ResultModelManager/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -1190,6 +1235,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/ROhdsiWebApi?branch=main"><img
 src="https://codecov.io/github/OHDSI/ROhdsiWebApi/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/ROhdsiWebApi.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -1216,6 +1263,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/SelfControlledCaseSeries?branch=main"><img
 src="https://codecov.io/github/OHDSI/SelfControlledCaseSeries/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/SelfControlledCaseSeries.html">Report</a></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -1242,6 +1291,8 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/SelfControlledCohort?branch=main"><img
 src="https://codecov.io/github/OHDSI/SelfControlledCohort/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a
+href="pare_reports/SelfControlledCohort.html">Report</a></td>
 </tr>
 <tr class="even">
 <td align="left"><a
@@ -1268,6 +1319,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/ShinyAppBuilder?branch=main"><img
 src="https://codecov.io/github/OHDSI/ShinyAppBuilder/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"></td>
 </tr>
 <tr class="odd">
 <td align="left"><a
@@ -1293,6 +1345,7 @@ <h1 class="title toc-ignore">Package statuses</h1>
 href="https://codecov.io/github/OHDSI/SqlRender?branch=main"><img
 src="https://codecov.io/github/OHDSI/SqlRender/coverage.svg?branch=main"
 alt="codecov.io" /></a></td>
+<td align="center"><a href="pare_reports/SqlRender">Report</a></td>
 </tr>
 </tbody>
 </table>

diff --git a/docs/pare_reports/Andromeda.html b/docs/pare_reports/Andromeda.html
diff --git a/docs/pare_reports/BigKnn.html b/docs/pare_reports/BigKnn.html
diff --git a/docs/pare_reports/Capr.html b/docs/pare_reports/Capr.html
diff --git a/docs/pare_reports/CirceR.html b/docs/pare_reports/CirceR.html
diff --git a/docs/pare_reports/CohortDiagnostics.html b/docs/pare_reports/CohortDiagnostics.html
diff --git a/docs/pare_reports/CohortGenerator.html b/docs/pare_reports/CohortGenerator.html
diff --git a/docs/pare_reports/CohortMethod.html b/docs/pare_reports/CohortMethod.html
diff --git a/docs/pare_reports/Cyclops.html b/docs/pare_reports/Cyclops.html
diff --git a/docs/pare_reports/DatabaseConnector.html b/docs/pare_reports/DatabaseConnector.html
diff --git a/docs/pare_reports/DatabaseConnectorJars.html b/docs/pare_reports/DatabaseConnectorJars.html
@@ -0,0 +1 @@
+
diff --git a/docs/pare_reports/EmpiricalCalibration.html b/docs/pare_reports/EmpiricalCalibration.html
diff --git a/docs/pare_reports/Eunomia.html b/docs/pare_reports/Eunomia.html
diff --git a/docs/pare_reports/EvidenceSynthesis.html b/docs/pare_reports/EvidenceSynthesis.html
diff --git a/docs/pare_reports/FeatureExtraction.html b/docs/pare_reports/FeatureExtraction.html
diff --git a/docs/pare_reports/Hydra.html b/docs/pare_reports/Hydra.html
diff --git a/docs/pare_reports/IterativeHardThresholding.html b/docs/pare_reports/IterativeHardThresholding.html
diff --git a/docs/pare_reports/MethodEvaluation.html b/docs/pare_reports/MethodEvaluation.html
diff --git a/docs/pare_reports/OhdsiSharing.html b/docs/pare_reports/OhdsiSharing.html
diff --git a/docs/pare_reports/ParallelLogger.html b/docs/pare_reports/ParallelLogger.html
diff --git a/docs/pare_reports/PatientLevelPrediction.html b/docs/pare_reports/PatientLevelPrediction.html
diff --git a/docs/pare_reports/PhenotypeLibrary.html b/docs/pare_reports/PhenotypeLibrary.html
diff --git a/docs/pare_reports/ROhdsiWebApi.html b/docs/pare_reports/ROhdsiWebApi.html
diff --git a/docs/pare_reports/SelfControlledCaseSeries.html b/docs/pare_reports/SelfControlledCaseSeries.html
diff --git a/docs/pare_reports/SelfControlledCohort.html b/docs/pare_reports/SelfControlledCohort.html
diff --git a/docs/pare_reports/SqlRender.html b/docs/pare_reports/SqlRender.html