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1. mortazavilab/Topyfic mortazavilab/Topyfic Public

   Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data

   Jupyter Notebook 10 1

2. mortazavilab/PyWGCNA mortazavilab/PyWGCNA Public

   PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

   Jupyter Notebook 215 53

3. mortazavilab/TranscriptClean mortazavilab/TranscriptClean Public

   Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

   Python 67 16

4. Topyfic_analysis Topyfic_analysis Public

   Data processing, analysis and figures for Topyfic paper

   Jupyter Notebook

5. modelAD_piplines modelAD_piplines Public

   Pipelines for analyzing model AD data in the Mortazavi lab

   eC

6. EngreitzLab/gene_network_evaluation EngreitzLab/gene_network_evaluation Public

   Evaluation framework for computationally inferred gene networks from single-cell data.

   Jupyter Notebook 9 7