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Data import/export updates#7

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wright13 wants to merge 69 commits intomainnationalparkservice/mojn-pine-rpackage:mainfrom sarah-devnationalparkservice/mojn-pine-rpackage:sarah-devCopy head branch name to clipboard

+11,279-25

Commits

Commits on Nov 13, 2023

• adding photo and seedling QC functions

  

  Irene Foster

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Commits on Nov 15, 2023

• adding pine tree QC function

  

  Irene Foster

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• update filter logic and adding explicit function calls

  

  Irene Foster

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Commits on Nov 16, 2023

• adding event data QC function

  

  Irene Foster

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Commits on Nov 17, 2023

• addng first two exploratory pine data viz

  

  Irene Foster

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Commits on Nov 29, 2023

• adding visualizations for individual sites

  

  Irene Foster

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• adding general pine visualizations

  

  Irene Foster

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Commits on Nov 30, 2023

• improvements and fixes to data import/export

  

  Wright

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• Clean up visualizations

  

  Irene Foster

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• reducing number of bins for height and DBH graphs

  

  Irene Foster

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• adding beginning of ojs

  

  Irene Foster

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Commits on Dec 4, 2023

• Changing graph titles

  

  Irene Foster

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Commits on Dec 5, 2023

• adding basal area and visit number calculations

  

  Irene Foster

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Commits on Dec 7, 2023

• adding ecological measures functions and graphs

  

  Irene Foster

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• adding relative frequency and relative dominance functions and graphs

  

  Irene Foster

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• adding importance value and dead tree graphs

  

  Irene Foster

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• cleaning up function code

  

  Irene Foster

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Commits on Dec 8, 2023

• adding vitality, mistle toe, and cone count graphs

  

  Irene Foster

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Commits on Dec 11, 2023

• adding canker and pine beetle graphs

  

  Irene Foster

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Commits on Dec 12, 2023

• moving data cleaning to function

  

  Irene Foster

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Commits on Dec 18, 2023

• Merge if-dev2

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  Wright

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• Add magrittr dependency, add documentation, comment out scratchwork

  

  Wright

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• Tweak qmd files to work with db/fetchaccess updates

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• Update gitignore to prevent tracking of qmd outputs

  

  Wright

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Commits on Dec 19, 2023

• updating dominance function

  

  Irene Foster

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• reformatting doc and adding community graphs

  

  Irene Foster

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Commits on Dec 27, 2023

• adding report template outline

  

  Irene Foster

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Commits on Dec 28, 2023

• adding seedling QC

  

  Irene Foster

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• chnaging calculations so they include zero plots

  

  Irene Foster

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• add event QC functions

  

  Irene Foster

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Commits on Jan 2, 2024

• add tree QC functions

  

  Irene Foster

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• adding first draft of event QC unit tests

  

  Irene Foster

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Commits on Jan 3, 2024

• adding a tree QC function

  

  Irene Foster

  committed
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• adding first draft of seedling QC unit tests

  

  Irene Foster

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• fixing recently dead tree QC

  

  Irene Foster

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• adding first draft of tree QC unit tests

  

  Irene Foster

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Commits on Jan 4, 2024

• Update default folders for writePine

  

  Wright

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• Initial work on data package builder for pine

  

  Wright

  committed
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• updating variable name and fixing line plot legends

  

  Irene Foster

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Commits on Jan 5, 2024

• modifying graph aesthetics

  

  Irene Foster

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Commits on Jan 8, 2024

• creating fake data for unit tests

  

  Irene Foster

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Commits on Jan 17, 2024

• adding script to make fake data for unit tests

  

  Irene Foster

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• update unit tests to include checking the number of rows in the fake data

  

  Irene Foster

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Commits on Jan 18, 2024

• generalizing paths and cleaning up code

  

  Irene Foster

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• moving visualization files and deleting old man files

  

  Irene Foster

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Commits on Jan 24, 2024

• moving files around and adding more unit tests

  

  Irene Foster

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Commits on Jan 25, 2024

• deleting report template

  

  Irene Foster

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• adding explicit function call

  

  Irene Foster

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Commits on Jan 26, 2024

• progress on data pkg/EML creation

  

  Wright

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• refactor tests

  

  Wright

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• Only read empty fields in CSV as NA

  

  Wright

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• Resolve merge conflict from if-dev2

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• Generate documentation files

  

  Wright

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Commits on Feb 5, 2024

• switching absolute paths to relative paths

  

  Irene Foster

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• adding visualization scripts for individual networks

  

  Irene Foster

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Commits on Feb 6, 2024

• deleting visualization first draft

  

  Irene Foster

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• adding function documentation

  

  Irene Foster

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Commits on Feb 29, 2024

• fix merge conflict

  

  Wright

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Commits on Mar 4, 2024

• add summary tables to KLMN visualization file

  

  Irene Foster

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Commits on Apr 9, 2024

• update description w/roxygen version

  

  Wright

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• start adding lat/long to site table (not functional)

  

  Wright

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• Merge branch 'if-dev2' into sarah-dev

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  Wright

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• Document return value for filterPine

  

  Wright

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Commits on Apr 11, 2024

• adding function to write QC results to excel file

  

  Irene Foster

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Commits on Apr 22, 2024

• merge Irene's updates

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  Wright

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Commits on Jun 13, 2024

• update data pkg creation

  

  Wright

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Commits on Jun 17, 2024

• deleting utm conversion that was added to loadPne function

  

  Irene Foster

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Commits on Jun 24, 2024

• adding README

  

  Irene Foster

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Commits on Nov 20, 2024

• Fix R cmd check issues

  wright13

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